PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72768.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

SBP

Protein Properties

Length: 1107aa MW: 122449 Da PI: 7.6733

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.3	6.7e-41	172	249	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C adls+ak+yhrrhkvC+ hsk++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ RWR72768.1 172 MCQVDDCGADLSNAKDYHRRHKVCQLHSKTTKALVGQQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 249 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1107 aa Download sequence
MEGELREQVA PPIFIPQSLP GRFCEAQNMT KKRDLPWQNN NYHNQHQLLQ LHQQQHQQLL 60 LNSGFYQNSK NHWNPKFWNW DSVMFTAKPT TTTDTAASDA LRLGIVESEL PKKKGEAQPK 120 PSPVSNKSSV DDDGESLALK LGGGSFLPEE PVVRPNKRVR SGSPGGGGSY PMCQVDDCGA 180 DLSNAKDYHR RHKVCQLHSK TTKALVGQQM QRFCQQCSRF HPLSEFDEGK RSCRRRLAGH 240 NRRRRKTQPE DVSSRLSITG NPENNSGGNM DIINLITVLA RLQGNNADKT SNNISIADKD 300 RLIQILSKIN SLPASANSTA RLPVPGNFDL NISSHNSQVP SEHQSKVNGI SHAPPSTMDL 360 FAVLSAAVAA SSPDALAILS QCRSASSGDD KSKVNCLEQE VGFNVQKKPM PMFPAVGLEK 420 GSNFQPPIEI SESPVQESRQ GLPLQLFSSS LEDDSPPKLG SARKYFSSDS SNPMEERSPS 480 SSPPVEQKLF PLHSSAEANK HVRISMRRED DVTTESRTSC GWNSTFELFR GSNGRAENGG 540 AVSNLPYQSG YSSSSSDHSP SSSNSGSQDR TGRIIFKLFD KDPSQFPGTL KTEILNWLSH 600 SPSEIESYIR PGCVVLSVYT SMPSIAWEEL QENLLQHVNS LVRDPGSDFW RNGRFLIHTD 660 RQLASHKDGK IRLSKSWRTW NAPELICVSP LAVVAGKETS LVLRGRNLTV PGTKIHCAYM 720 GGYTSKEISG SPHSGTIYDD SCMENFILPG GEPNVFGRCF IEVENCFKGN SFPVIIADAT 780 ICQELRVLES EFEDDTRLLN CVSEDQIVNF GQPSSRADVL HFLNELGWFF QRKSTPNRPA 840 SSGFSSARLK FLFTFSVERD WSALVKALLD IIVEENSGIG CSSRELLETL EEIQILNRAV 900 KRKCRKMVNL LLHYSISSSN DNSRNYLFPP NQAGPGGLTP LHLAACTQDS EDMVDELTND 960 PQDIGLNCWN SLLDANGKSP YAYALMRNYQ SYNQLVARKL IDKRNNQVSV TIGNPEISLD 1020 QSWVIAAEPD KPNPPPVQGR SCAQCSSVAM RRFKRMPGSQ GLLHRPYVHS MLAIAAVCVC 1080 VCLFLRGSPD IGSVAPFKWE NVDYGSV

Sequence ? help Back to Top

Protein Sequence Length: 1107 aa Download sequence

MEGELREQVA PPIFIPQSLP GRFCEAQNMT KKRDLPWQNN NYHNQHQLLQ LHQQQHQQLL  60
LNSGFYQNSK NHWNPKFWNW DSVMFTAKPT TTTDTAASDA LRLGIVESEL PKKKGEAQPK  120
PSPVSNKSSV DDDGESLALK LGGGSFLPEE PVVRPNKRVR SGSPGGGGSY PMCQVDDCGA  180
DLSNAKDYHR RHKVCQLHSK TTKALVGQQM QRFCQQCSRF HPLSEFDEGK RSCRRRLAGH  240
NRRRRKTQPE DVSSRLSITG NPENNSGGNM DIINLITVLA RLQGNNADKT SNNISIADKD  300
RLIQILSKIN SLPASANSTA RLPVPGNFDL NISSHNSQVP SEHQSKVNGI SHAPPSTMDL  360
FAVLSAAVAA SSPDALAILS QCRSASSGDD KSKVNCLEQE VGFNVQKKPM PMFPAVGLEK  420
GSNFQPPIEI SESPVQESRQ GLPLQLFSSS LEDDSPPKLG SARKYFSSDS SNPMEERSPS  480
SSPPVEQKLF PLHSSAEANK HVRISMRRED DVTTESRTSC GWNSTFELFR GSNGRAENGG  540
AVSNLPYQSG YSSSSSDHSP SSSNSGSQDR TGRIIFKLFD KDPSQFPGTL KTEILNWLSH  600
SPSEIESYIR PGCVVLSVYT SMPSIAWEEL QENLLQHVNS LVRDPGSDFW RNGRFLIHTD  660
RQLASHKDGK IRLSKSWRTW NAPELICVSP LAVVAGKETS LVLRGRNLTV PGTKIHCAYM  720
GGYTSKEISG SPHSGTIYDD SCMENFILPG GEPNVFGRCF IEVENCFKGN SFPVIIADAT  780
ICQELRVLES EFEDDTRLLN CVSEDQIVNF GQPSSRADVL HFLNELGWFF QRKSTPNRPA  840
SSGFSSARLK FLFTFSVERD WSALVKALLD IIVEENSGIG CSSRELLETL EEIQILNRAV  900
KRKCRKMVNL LLHYSISSSN DNSRNYLFPP NQAGPGGLTP LHLAACTQDS EDMVDELTND  960
PQDIGLNCWN SLLDANGKSP YAYALMRNYQ SYNQLVARKL IDKRNNQVSV TIGNPEISLD  1020
QSWVIAAEPD KPNPPPVQGR SCAQCSSVAM RRFKRMPGSQ GLLHRPYVHS MLAIAAVCVC  1080
VCLFLRGSPD IGSVAPFKWE NVDYGSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein