PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR72732.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | C3H | ||||||||
Protein Properties | Length: 300aa MW: 31557.9 Da PI: 9.7393 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.2 | 1.2e-07 | 105 | 130 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ + Ck+Gd+C+FaHg+ RWR72732.1 105 KTRMCNKYNSAEGCKFGDKCHFAHGE 130 899*******99************96 PP | |||||||
2 | zf-CCCH | 37.3 | 4.5e-12 | 267 | 291 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +fa+ G C +G+rC+FaHg RWR72732.1 267 YKTKLCENFAK-GSCTFGERCHFAHG 291 9**********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence |
MDLARKRRPD AALNGNGGVA GSKRFKQELE SVPTGIGSKS KPCTKFFSTA GCPFGEGCHF 60 LHYVPGGINA VAHMTNHGNP ALPPSSRNHV VSPAIPDGTS PPFVKTRMCN KYNSAEGCKF 120 GDKCHFAHGE RELGKPIIPS HEDRPLASMT GRLAGRIEPP PPGLAAAASF GASATAKISV 180 DASLAGAIIG KAGVNSKQIC RVTGAKLSIR EHETDPNLRN IELEGTFDQI KQASTMVREL 240 IVNISSNASA PMKNNPAAAP SGPTSNYKTK LCENFAKGSC TFGERCHFAH GASEMRKPGA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-79 | C3H family protein |