PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR72672.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family NF-YA
Protein Properties Length: 328aa    MW: 36017 Da    PI: 8.7003
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR72672.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1041.4e-32154210158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF
  RWR72672.1 154 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHQHAMRRARGNGGRF 210
                 69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MNSKRGNTSL VSEGQGDQPA TICSQPWWRG STLEMTEGGV GTKAGQSQRP DDGRDEGADV  60
SKEVQNLKAQ SDGRFGHEHQ QSQHATSNVP PVMAEYGVPH TQLELGHSIA CASYPFPDHY  120
YGRVMTAYGP QALVHPHVIG VQHTRMPLPL EMAEEPVYVN AKQYHGILRR RQSRAKAELE  180
KKLIKVRKPY LHESRHQHAM RRARGNGGRF LNTKKLDNNA TQRNTEDIGS SASAPLQSAS  240
SSGSDGIHSD RMLCSSNTTQ EVKGPTMQDM REQHTYASGS GCYQQHSGFP MSAFHPLSGE  300
RGEEGNCLGQ QRSGMLVGQA PHRAVTIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.19e-49NF-YA family protein