PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72584.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 594aa MW: 66022.4 Da PI: 7.9444

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72584.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	7.8e-06	292	316	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++lC f tG C++G++C+F H+ RWR72584.1 292 GERLCFKFTSTGSCSRGEKCNFRHD 316 6789999999************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence
MAPPRILLCG DVLGRLNQLF KRVSSVNKSA GPFDALFCVG QFFPDSSDLL DEFSQYLEGH 60 SQIPLPTYFI GDYGVGAVKY LSAASKDPTN LGFKTDGLKI CDNLYWLKGS GKFTLLELSI 120 AYLSGRQSSG GQSMGTYIIT NEWPSGIINR ANTSDAPVGI SDTSGTDPII SQLAAEVKPR 180 YHIAGTKGIF YAREPYSNDG ALHVTRFLGL APVGNKDKQK FIHAISPTPA STMSVAEISM 240 KPPNTTLTPY TVTEKIASTT EAAKRSSNTI SDEQYWRYDV SQKRQRQGSA DGERLCFKFT 300 STGSCSRGEK CNFRHDMNAR EQYIGGGCFD FINKGRCERG SDCSFQHGFG EEADGSSGKR 360 NRSNARGNVS DRSQGKKCWF CLSSPDIESH LVLSIGESCY CALAKGALVE DHVLIIPVEH 420 RSNTLSLEPE AEKDLQRFKD ALKLYFKNQR KAVVFYEWLF KHGTTMHANL QAVPIPISKA 480 ADVRRYFNLA AKKFGFEFEV VSPGNQYNEG RKSLRTQFDG KSSFFYVELP EGTILSHSVE 540 DKEQFPVQFG REVLASLLDV TEKADWRNCI LSKEEETQMA EGFKKRFEAF DPAR

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence

MAPPRILLCG DVLGRLNQLF KRVSSVNKSA GPFDALFCVG QFFPDSSDLL DEFSQYLEGH  60
SQIPLPTYFI GDYGVGAVKY LSAASKDPTN LGFKTDGLKI CDNLYWLKGS GKFTLLELSI  120
AYLSGRQSSG GQSMGTYIIT NEWPSGIINR ANTSDAPVGI SDTSGTDPII SQLAAEVKPR  180
YHIAGTKGIF YAREPYSNDG ALHVTRFLGL APVGNKDKQK FIHAISPTPA STMSVAEISM  240
KPPNTTLTPY TVTEKIASTT EAAKRSSNTI SDEQYWRYDV SQKRQRQGSA DGERLCFKFT  300
STGSCSRGEK CNFRHDMNAR EQYIGGGCFD FINKGRCERG SDCSFQHGFG EEADGSSGKR  360
NRSNARGNVS DRSQGKKCWF CLSSPDIESH LVLSIGESCY CALAKGALVE DHVLIIPVEH  420
RSNTLSLEPE AEKDLQRFKD ALKLYFKNQR KAVVFYEWLF KHGTTMHANL QAVPIPISKA  480
ADVRRYFNLA AKKFGFEFEV VSPGNQYNEG RKSLRTQFDG KSSFFYVELP EGTILSHSVE  540
DKEQFPVQFG REVLASLLDV TEKADWRNCI LSKEEETQMA EGFKKRFEAF DPAR