PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72583.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LBD

Protein Properties

Length: 269aa MW: 30546.2 Da PI: 6.2776

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.6	1.2e-39	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkC++dCvlapyfp e++++f+n+hklFG+sn+ k++++++++++ damss+++eA++ra+dPv G++++i++l+++ ++ ael+ + + RWR72583.1 14 ACAACKYQRRKCTPDCVLAPYFPPEKQHEFRNAHKLFGVSNINKIISNINPDQKADAMSSIIFEANMRANDPVGGCYRIIHNLEREKQRRIAELQFVLH 112 7*****************************************************************************************999998876 PP DUF260 100 e 100 + RWR72583.1 113 Q 113 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence
MSGRGGSNGS GTQACAACKY QRRKCTPDCV LAPYFPPEKQ HEFRNAHKLF GVSNINKIIS 60 NINPDQKADA MSSIIFEANM RANDPVGGCY RIIHNLEREK QRRIAELQFV LHQLALCREQ 120 QQQQQKHVAV ETATTTIVHH TQLGLNVNSD IEVNDYNSMQ QQIQQNHFLY RQDLAPWMDV 180 QQQNHNMIME NGCMDSSSTH ILDGECDEMK PLVEMFDRKP AFLDTNESFP CSSRIGLQED 240 NDSLEQVREH DLKGAASFFT LKNSNTSSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	9e-37	LBD family protein