PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR72493.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HD-ZIP
Protein Properties Length: 839aa    MW: 91896.9 Da    PI: 6.5087
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR72493.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-181876357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  RWR72493.1 18 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 76
                5679*****************************************************97 PP
2START178.34.4e-561623702205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++v+  g  g+++l +++l
  RWR72493.1 162 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRSVDVINVLPAGngGTIELLYMQL 259
                 789*******************************************************.8888888888****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+ +Ry+  l++g++v++++S++s+q  p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s++  ++
  RWR72493.1 260 YAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLSSTQGGPSmpaVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTGLAQ 358
                 ****************************************999899***************************************************** PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 kt+ a+l+++++
  RWR72493.1 359 KTTIAALRQLRQ 370
                 *******99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    
MMAVTQSKES KSGMDPGKYV RYTPEQVEAL ERLYHDCPKP SSIRRQQLIR ECPILSHIEP  60
KQIKVWFQNR RCREKQRKEA SRLQTVNRKL SAMNKLLMEE NDRLQKQVSQ LVYENGYFRQ  120
QSQNTALATT DTSCESVVTS GQHHLTPQHP PRDASPAGLL SIAEETLTEF LSKATGTAVE  180
WVQMPGMKPG PDSIGIVAIS HGCTGVAARA CGLVGLEPTR VAEILKDRPS WFRDCRSVDV  240
INVLPAGNGG TIELLYMQLY APTTLAPARD FWLLRYTSVL EDGSLVVCER SLSSTQGGPS  300
MPAVQHFVRA EMLPSGYLIR PCEGGGSIIH IVDHMDLEPW SVPEVLRPLY ESSTGLAQKT  360
TIAALRQLRQ ISQETSPSTM SGWGRRPAAL RALSQRLSRG FNEALNGFTD EGWSLMGSDG  420
VDDVTILVNS SPSKIMGLNV AFTNGFPAMN NAILCAKASM LLQNVPPAIL LRFLREHRSE  480
WADSNIDAYS AAAVKAGPCS LPGSRIGGFG GQVILPLAHT IEHEEFLEVI KLENMGHSQE  540
DAMMARDIFL LQLCSGVDEN AVGTCAELVF APIDASFADD APLLPSGFRI IPLDTGVDPS  600
SPNRTLDLAS ALEVGPTGNK SSSGYSGSSG SMRSVMTIAF QFAFENHLQD NVASMARQYV  660
RSIISSVQRV ALALSPSRLS PNGGLRPPPG TPEAVTLARW ISQSYKRHLG VELLKSGSDG  720
NESFLKTLWH HSDAIVCCSL KALPVFTFAN QAGFDMLETT LVALQDITLE KIFDDQGRKV  780
LYNEFPQIMQ QGFACLQGGI CVSSMGRPVS YERAVAWKVL NEEESTHCIA FMFVNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein