PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR72438.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HSF
Protein Properties Length: 284aa    MW: 32477.9 Da    PI: 6.3782
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR72438.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.14.4e-36161082103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d+++++lisw  n+nsf+v+d+ +f++++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++sF +g+++ll++i 
    RWR72438.1  16 FVLKTYQMVNDPSTDSLISWGPNNNSFIVFDPLDFSQRLLPTYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANESFLRGQQHLLDNIL 103
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    RWR72438.1 104 RRKNQ 108
                   **986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MMFYGMEEPN NSVAPFVLKT YQMVNDPSTD SLISWGPNNN SFIVFDPLDF SQRLLPTYFK  60
HNNFSSFVRQ LNTYGFRKVD PDKWEFANES FLRGQQHLLD NILRRKNQTH PTHHTLISKL  120
EDEGEMEKAT LSELAQLQQE QRGMEEEIQG MGQRLRATEK KPEKMMALLL KVMENPDVLS  180
RKMVEKEARK RLGEKRRRLA RISSPSSSYP SNTREEEDMA KINSVVNINM NPNPMVNMAT  240
ATSTGMGIGT GDMNSNIGLP PDSLVPECYY NSEMTVLPAW GAFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195199KRRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-78HSF family protein