PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023007212.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family M-type_MADS
Protein Properties Length: 316aa    MW: 36416.3 Da    PI: 7.7861
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023007212.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.42.5e-20962150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE....EEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk....lyeys 50
                    k i+n+  r++tfskR+n ++ KA+ELS+LCd++ +vi+ ++++     +++++
  XP_023007212.1  9 KLISNEKSRKTTFSKRKNSLMRKAYELSTLCDVRTCVIVHGPSQSdqspVHTWP 62
                    569*************************************99864333366666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MGRGKLSMKL ISNEKSRKTT FSKRKNSLMR KAYELSTLCD VRTCVIVHGP SQSDQSPVHT  60
WPSSCDSVND MIASYKANCL HKRTRKSFNL FDFFSDRKKK IESDMSKLRK DVAKARYPKW  120
DERLEYLMEE QLRVLIVEID SKLDATKRRI ENVEERVSGG SNQTLNANMN KNQVISFEET  180
QPMMTYNQIQ AMPQDLQAGS SAVPMIQMDH EFENLNQFIY GSSVPQIHGN YFQNPNFCSD  240
PTNGMIMDST QNYSMCHYGV PLAPTHSIMP LSYMQLTDDQ MMMGCSSNSQ MGLPNASNQV  300
NDQLDYFNYE YFMKNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-24M-type_MADS family protein