PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023006842.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 542aa MW: 61300.8 Da PI: 8.2352

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023006842.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.7	6.6e-06	86	106	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f++ G+C+ Gd+C+F Hg XP_023006842.1 86 PCYFYFN-GFCSKGDTCTFLHG 106 7999999.*************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MGEEFRKRNT DCVYFLASPL TCKKGFDCEY RHSEIARLNP RDCYYWLAGN CLNATCSFRH 60 PPMDGAAGKV FESSQSSVPV NKTNIPCYFY FNGFCSKGDT CTFLHGNDIT VAARSTKIGN 120 TSSSEDKAAS SHKNGLASTD ADAFLHPSKK VIGPTIEGTF RESRSQPSAE KVSIRSACAK 180 ISLPECEKVA VDEPVSLPLT EGSKYSRSHV HVVADQSYEE PMMDSSEDEN PLESSTGFDV 240 VVGHELENLD SDDDSEYLLS TNLEQRELDA ELCRDDDEDY IAYDPMHSDL ELLYEREMHS 300 YDHLERNSVL SNDRNIISCS RGKLIKSLFT RKRELTLMNI DSEEWNRTDL RSYLQRDSVS 360 GNGSIIGLSR RKNGMSCRTS RSFAKPWKNG LYHPTLGRRL PLHVGKVSGE SPSENLTFSN 420 SISGYRSFRH SRQYKPCRYY DGYRLARRQH PLSNISRRPV SREPVPRDHG FKLKSVPFKG 480 PKTLSQIKDE KRKVEENRGL SMKKRHSIGC ASSSADFRGP KPLSDILKDK RKVEKLVKEI 540 IT

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MGEEFRKRNT DCVYFLASPL TCKKGFDCEY RHSEIARLNP RDCYYWLAGN CLNATCSFRH  60
PPMDGAAGKV FESSQSSVPV NKTNIPCYFY FNGFCSKGDT CTFLHGNDIT VAARSTKIGN  120
TSSSEDKAAS SHKNGLASTD ADAFLHPSKK VIGPTIEGTF RESRSQPSAE KVSIRSACAK  180
ISLPECEKVA VDEPVSLPLT EGSKYSRSHV HVVADQSYEE PMMDSSEDEN PLESSTGFDV  240
VVGHELENLD SDDDSEYLLS TNLEQRELDA ELCRDDDEDY IAYDPMHSDL ELLYEREMHS  300
YDHLERNSVL SNDRNIISCS RGKLIKSLFT RKRELTLMNI DSEEWNRTDL RSYLQRDSVS  360
GNGSIIGLSR RKNGMSCRTS RSFAKPWKNG LYHPTLGRRL PLHVGKVSGE SPSENLTFSN  420
SISGYRSFRH SRQYKPCRYY DGYRLARRQH PLSNISRRPV SREPVPRDHG FKLKSVPFKG  480
PKTLSQIKDE KRKVEENRGL SMKKRHSIGC ASSSADFRGP KPLSDILKDK RKVEKLVKEI  540
IT