PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023006835.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 559aa MW: 63191.9 Da PI: 8.0617

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023006835.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.6	6.8e-06	103	123	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f++ G+C+ Gd+C+F Hg XP_023006835.1 103 PCYFYFN-GFCSKGDTCTFLHG 123 7999999.*************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence
MLNRSRVGFC VSIYGASDIV DGPFQFIFYP HTMIIRFLDS NGFDCEYRHS EIARLNPRDC 60 YYWLAGNCLN ATCSFRHPPM DGAAGKVFES SQSSVPVNKT NIPCYFYFNG FCSKGDTCTF 120 LHGNDITVAA RSTKIGNTSS SEDKAASSHK NGLASTDADA FLHPSKKVIG PTIEGTFRES 180 RSQPSAEKVS IRSACAKISL PECEKVAVDE PVSLPLTEGS KYSRSHVHVV ADQSYEEPMM 240 DSSEDENPLE SSTGFDVVVG HELENLDSDD DSEYLLSTNL EQRELDAELC RDDDEDYIAY 300 DPMHSDLELL YEREMHSYDH LERNSVLSND RNIISCSRGK LIKSLFTRKR ELTLMNIDSE 360 EWNRTDLRSY LQRDSVSGNG SIIGLSRRKN GMSCRTSRSF AKPWKNGLYH PTLGRRLPLH 420 VGKVSGESPS ENLTFSNSIS GYRSFRHSRQ YKPCRYYDGY RLARRQHPLS NISRRPVSRE 480 PVPRDHGFKL KSVPFKGPKT LSQIKDEKRK VEENRGLSMK KRHSIGCASS SADFRGPKPL 540 SDILKDKRKV EKLVKEIIT

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence

MLNRSRVGFC VSIYGASDIV DGPFQFIFYP HTMIIRFLDS NGFDCEYRHS EIARLNPRDC  60
YYWLAGNCLN ATCSFRHPPM DGAAGKVFES SQSSVPVNKT NIPCYFYFNG FCSKGDTCTF  120
LHGNDITVAA RSTKIGNTSS SEDKAASSHK NGLASTDADA FLHPSKKVIG PTIEGTFRES  180
RSQPSAEKVS IRSACAKISL PECEKVAVDE PVSLPLTEGS KYSRSHVHVV ADQSYEEPMM  240
DSSEDENPLE SSTGFDVVVG HELENLDSDD DSEYLLSTNL EQRELDAELC RDDDEDYIAY  300
DPMHSDLELL YEREMHSYDH LERNSVLSND RNIISCSRGK LIKSLFTRKR ELTLMNIDSE  360
EWNRTDLRSY LQRDSVSGNG SIIGLSRRKN GMSCRTSRSF AKPWKNGLYH PTLGRRLPLH  420
VGKVSGESPS ENLTFSNSIS GYRSFRHSRQ YKPCRYYDGY RLARRQHPLS NISRRPVSRE  480
PVPRDHGFKL KSVPFKGPKT LSQIKDEKRK VEENRGLSMK KRHSIGCASS SADFRGPKPL  540
SDILKDKRKV EKLVKEIIT