PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023006252.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 214aa MW: 23956.9 Da PI: 9.4663 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.5 | 1.7e-23 | 26 | 73 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + e ks +qvtfskRr+g++KKA ELSvLC+aeva+i+fs+++k++ + XP_023006252.1 26 KLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCF 73 67899***************************************9866 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence |
MEEPKLQRKS IPMKKTLGRQ KIEIKKLEKK SSKQVTFSKR RAGLFKKAGE LSVLCGAEVA 60 IIVFSPNDKV FCFGHPNVDV LLDRYLTGNL SPPKPAESYV PVAEFNRDFA DLVLEFEAEK 120 KRAEELIQAS EESRNSGGFW WEEAVEGMRL EELKEFRSSL MDLRAKVAEK VEKLTAVRIG 180 GPLLPALPPP PPPMMPPSFH LAGNHHVATG LGFF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-36 | M-type_MADS family protein |