PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023006009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 25855.7 Da PI: 7.8894 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.9 | 1.7e-29 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +l+l++a p++ r+++++sl++eA+ r+ +P+yG++g+++++++ql+q XP_023006009.1 4 SCNGCRVLRKGCSESCSIRPCLqwiktPQSQANATFFLAKFYGRAGLLNLINAGPDHLRPAIFKSLLFEACGRIVNPIYGSAGLLWSGSWQLCQD 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 ++e++l ++ XP_023006009.1 99 AVEAVLKGA 107 **9988766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence |
MRLSCNGCRV LRKGCSESCS IRPCLQWIKT PQSQANATFF LAKFYGRAGL LNLINAGPDH 60 LRPAIFKSLL FEACGRIVNP IYGSAGLLWS GSWQLCQDAV EAVLKGAPIL PVSSESAASH 120 MGPPLKGCDI RHVSRQQGSA PDSALQKIKT RRRLKRSAPN KPMPKEEPVV VTEFAFDDPT 180 RIVSEPRCLM FELDSWVGHK SQEKDGSSGS SDEAECLSVE GSAVEQVGDV ELELSLGL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 3e-83 | LBD family protein |