PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023005950.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 464aa MW: 50820.1 Da PI: 9.8472

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023005950.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023005950.1 62 FVCEICNKGFQRDQNLQLHRRGH 84 89*******************88 PP
2	zf-C2H2	12.2	0.00054	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_023005950.1 139 WKCDKCSKKYAVQSDWKAHSKTC 161 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MSSNPFSLLS STTTPFAPHQ DANPKSKPSF ATKKKRNLPG TPDPDAEVIA LSPKSLMATN 60 RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRTNKEMIK KKVYICPEKT CVHHDPSRAL 120 GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV QSDWKAHSKT CGTREYKCDC GTLFSRKDSF 180 ITHRAFCDAL AEESARITTI SATNILNNLR NDSIVLHQQE QNNLESLGDV PGLSQFSNSD 240 NFLRDFEEQQ HKNRSPLSLW LNQASVDNAM NNNNISHFFG ASSSSSNLFG SMTESGLSVL 300 PVIEKEDVEN KGSVSKATAA AALLGQSSQS FVSSSPMSAT ALLQKAALMG STRSSNNNNS 360 QLFGAGTFGV MSSSSSSLNS FNKSRSPTMA DSVQMVGNNS NLSSDCLNQL LLPPNDSNKM 420 RSSGQTRDFL GVGGGEAPRP PFLPPELAKF AAINSTMGLS QFNH

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MSSNPFSLLS STTTPFAPHQ DANPKSKPSF ATKKKRNLPG TPDPDAEVIA LSPKSLMATN  60
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRTNKEMIK KKVYICPEKT CVHHDPSRAL  120
GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV QSDWKAHSKT CGTREYKCDC GTLFSRKDSF  180
ITHRAFCDAL AEESARITTI SATNILNNLR NDSIVLHQQE QNNLESLGDV PGLSQFSNSD  240
NFLRDFEEQQ HKNRSPLSLW LNQASVDNAM NNNNISHFFG ASSSSSNLFG SMTESGLSVL  300
PVIEKEDVEN KGSVSKATAA AALLGQSSQS FVSSSPMSAT ALLQKAALMG STRSSNNNNS  360
QLFGAGTFGV MSSSSSSLNS FNKSRSPTMA DSVQMVGNNS NLSSDCLNQL LLPPNDSNKM  420
RSSGQTRDFL GVGGGEAPRP PFLPPELAKF AAINSTMGLS QFNH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-105	C2H2 family protein