PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023005912.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 480aa MW: 52951.1 Da PI: 5.9635

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023005912.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.8	4.8e-17	159	208	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_023005912.1 159 SQYRGVTYYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDKAAIKFRG 208 78*****************......55**********************997 PP
2	AP2	40.3	7.9e-13	251	301	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + rk+ +lg f+++ eAa+a++ a+++ +g XP_023005912.1 251 SKYRGVTLHK-CGRWEARMGQFL---GRKYMYLGLFDSEIEAARAYDIAALRCNG 301 89******.7**55532...26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MLNLNHDVVP SEMVTESFLN FPANRMETAG CFNSSSVVNG DPSASTTNVD EVFPFTIGKN 60 YAVQESSTVK SLSISDDHCD QTIELFPLTD GLNSISDDHR DQTKEFFPLT DGLNTSSSTQ 120 MQWPEVSPSE FNHGDGGAPA QPQDQAMRKN RRGPRPRSSQ YRGVTYYRRT GRWESHIWDC 180 GKQVYLGGFD TAHAAARAYD KAAIKFRGVD ADINFSVRNY EEDIKQMSNI TKEELIHNLR 240 RRSNGFTRGS SKYRGVTLHK CGRWEARMGQ FLGRKYMYLG LFDSEIEAAR AYDIAALRCN 300 GKEAVTNFDP SSYMSEMAAE IDTGEDNQSL DLSLRIAPPN HSDPQSESIG MFGNGCHLSS 360 PDVVVDGRTT LENSVSAAIE SSQPYGYAVP SNSCFFPISR ERAAETRMGE WQIHGHSNRL 420 TSVPFFSAAA SSGFPSSSSS SSSSSSSSSS SISSSAVGEI HFSAIFHHHD SNLSNFYCRN

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MLNLNHDVVP SEMVTESFLN FPANRMETAG CFNSSSVVNG DPSASTTNVD EVFPFTIGKN  60
YAVQESSTVK SLSISDDHCD QTIELFPLTD GLNSISDDHR DQTKEFFPLT DGLNTSSSTQ  120
MQWPEVSPSE FNHGDGGAPA QPQDQAMRKN RRGPRPRSSQ YRGVTYYRRT GRWESHIWDC  180
GKQVYLGGFD TAHAAARAYD KAAIKFRGVD ADINFSVRNY EEDIKQMSNI TKEELIHNLR  240
RRSNGFTRGS SKYRGVTLHK CGRWEARMGQ FLGRKYMYLG LFDSEIEAAR AYDIAALRCN  300
GKEAVTNFDP SSYMSEMAAE IDTGEDNQSL DLSLRIAPPN HSDPQSESIG MFGNGCHLSS  360
PDVVVDGRTT LENSVSAAIE SSQPYGYAVP SNSCFFPISR ERAAETRMGE WQIHGHSNRL  420
TSVPFFSAAA SSGFPSSSSS SSSSSSSSSS SISSSAVGEI HFSAIFHHHD SNLSNFYCRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	2e-77	AP2 family protein