PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023005873.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family M-type_MADS
Protein Properties Length: 363aa    MW: 40714.8 Da    PI: 4.7485
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023005873.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.28e-121152344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i ++  r+ +f kRr g++KK +EL +LC++ +  +++++++
  XP_023005873.1 11 IASDNARKASFKKRRLGLMKKVSELTTLCGVYAFAVVYGPDD 52
                    678889*********************************985 PP

Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MTRKKVKLVW IASDNARKAS FKKRRLGLMK KVSELTTLCG VYAFAVVYGP DDDNPVIWPS  60
LSAAQHLYRR FHSLPEVERQ KKMTNQETYL KERTAKAQDL LKKHMKKNQE LEIDLLMHQL  120
HQGRQIYQLS TEELLGLFWM VEEKMRECRK RIEYHQQVHR LHPPPGFVSS NTPLLPTGSN  180
EMDLVDNGRN LMDQWFIDMV MNSNDKIGGS SSSMAGELGF QSEGNVGGNS MMEVVDLGGR  240
TTITAEGDMD ENNLLCDWNF GGTGCGMSEI EKLVSNLGGV DDNASPMDLA NPQANYGMIG  300
DGGDGASVEA EMMLHGLFGS GSRSRSSNGT ENETLIEKVN EEEEEEADED DLLNKEWPNN  360
FTP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLVWIASDNARKASFKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.14e-39M-type_MADS family protein