PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023004039.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 743aa MW: 81862 Da PI: 6.8861

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023004039.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.7e-07	194	214	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+f+a+ G+C G++C+F H XP_023004039.1 194 AICDFYAK-GWCIKGSSCSFLH 214 68****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence
MDAKRHDKHL RSDTITTTEN SEVNKLSSVG ETESNGNIEF ARLSGEPLAK LVEQSHGECK 60 KVESRKCPKD KETEDQELTV DDKDVEALRN NLPKDSGGSI YNSKVPLCNR GIINAKVSNG 120 LSVTVEDSDI GLENHLVGGN IGSTNPEKES TQTDMQLENG KNQMASRSAA SKKRTRKLSP 180 GADVNIEQKR PAAAICDFYA KGWCIKGSSC SFLHIKDNAH GSDQHSEEHA GAVYLKKQVQ 240 PNQAGLQYSA DASKSPVFHH PPNSSFLKDS SLSLKFGISS ERTLPRDFTE SKGWDVLHEK 300 NKFLLHQRED PLLREHPDCQ KLPSTSFDVS FPLNREGSTA RNDQPPEFGP SSGGFAKLSV 360 MEEPANVACP HLLNDYHSPV LRSSLNSNTT LTKGGILSSR FTTSNDSFPF TPSSSASFFG 420 AQKMFIIDGE HRVSMPASSF TRSSPFSPSE SDNSLINASM NSSDYKTKYS CDDWEPSEPF 480 RPSFFIPSIN TASQYDPFLD SIELPRKVGG CHNVSLDHQG REEVSPLSTL HRASGNYMVP 540 GSSKPEFNDD TSSLSSHNKA EDKNEKAGHV QGTDSLMLEA EIQGSSGIDG CNGSRTREDD 600 HMGLIREKNV PKKMKTDTDG KINLSNIALH EKESEAESDR QLGDMDGKHL IDGNVHKESK 660 ATRHFRSALI ELVKGILRPK WREGHLKKDV HNTVVKKTLD KVLGTLQPFQ VPTTVESVKQ 720 YLSSSRPKIE KLVEGYVSKY GKS

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence

MDAKRHDKHL RSDTITTTEN SEVNKLSSVG ETESNGNIEF ARLSGEPLAK LVEQSHGECK  60
KVESRKCPKD KETEDQELTV DDKDVEALRN NLPKDSGGSI YNSKVPLCNR GIINAKVSNG  120
LSVTVEDSDI GLENHLVGGN IGSTNPEKES TQTDMQLENG KNQMASRSAA SKKRTRKLSP  180
GADVNIEQKR PAAAICDFYA KGWCIKGSSC SFLHIKDNAH GSDQHSEEHA GAVYLKKQVQ  240
PNQAGLQYSA DASKSPVFHH PPNSSFLKDS SLSLKFGISS ERTLPRDFTE SKGWDVLHEK  300
NKFLLHQRED PLLREHPDCQ KLPSTSFDVS FPLNREGSTA RNDQPPEFGP SSGGFAKLSV  360
MEEPANVACP HLLNDYHSPV LRSSLNSNTT LTKGGILSSR FTTSNDSFPF TPSSSASFFG  420
AQKMFIIDGE HRVSMPASSF TRSSPFSPSE SDNSLINASM NSSDYKTKYS CDDWEPSEPF  480
RPSFFIPSIN TASQYDPFLD SIELPRKVGG CHNVSLDHQG REEVSPLSTL HRASGNYMVP  540
GSSKPEFNDD TSSLSSHNKA EDKNEKAGHV QGTDSLMLEA EIQGSSGIDG CNGSRTREDD  600
HMGLIREKNV PKKMKTDTDG KINLSNIALH EKESEAESDR QLGDMDGKHL IDGNVHKESK  660
ATRHFRSALI ELVKGILRPK WREGHLKKDV HNTVVKKTLD KVLGTLQPFQ VPTTVESVKQ  720
YLSSSRPKIE KLVEGYVSKY GKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-32	C3H family protein