PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023004037.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 771aa    MW: 85118.7 Da    PI: 6.9045
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023004037.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-07223243425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     ++C+f+a+ G+C  G++C+F H
  XP_023004037.1 223 AICDFYAK-GWCIKGSSCSFLH 243
                     68******.************* PP

Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    
MRGIFIELDS RGHAQVPRKN VYLVDVCNDM DAKRHDKHLR SDTITTTENS EVNKLSSVGE  60
TESNGNIEFA RLSGEPLAKL VEQSHGECKK VESRKCPKDK ETEDQELTVD DKDVEALRNN  120
LPKDSGGSIY NSKVPLCNRG IINAKVSNGL SVTVEDSDIG LENHLVGGNI GSTNPEKEST  180
QTDMQLENGK NQMASRSAAS KKRTRKLSPG ADVNIEQKRP AAAICDFYAK GWCIKGSSCS  240
FLHIKDNAHG SDQHSEEHAG AVYLKKQVQP NQGLQYSADA SKSPVFHHPP NSSFLKDSSL  300
SLKFGISSER TLPRDFTESK GWDVLHEKNK FLLHQREDPL LREHPDCQKL PSTSFDVSFP  360
LNREGSTARN DQPPEFGPSS GGFAKLSVME EPANVACPHL LNDYHSPVLR SSLNSNTTLT  420
KGGILSSRFT TSNDSFPFTP SSSASFFGAQ KMFIIDGEHR VSMPASSFTR SSPFSPSESD  480
NSLINASMNS SDYKTKYSCD DWEPSEPFRP SFFIPSINTA SQYDPFLDSI ELPRKVGGCH  540
NVSLDHQGRE EVSPLSTLHR ASGNYMVPGS SKPEFNDDTS SLSSHNKAED KNEKAGHVQG  600
TDSLMLEAEI QGSSGIDGCN GSRTREDDHM GLIREKNVPK KMKTDTDGKI NLSNIALHEK  660
ESEAESDRQL GDMDGKHLID GNVHKESKAT RHFRSALIEL VKGILRPKWR EGHLKKDVHN  720
TVVKKTLDKV LGTLQPFQVP TTVESVKQYL SSSRPKIEKL VEGYVSKYGK S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-32C3H family protein