PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023004037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 771aa MW: 85118.7 Da PI: 6.9045 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22 | 2.8e-07 | 223 | 243 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+f+a+ G+C G++C+F H XP_023004037.1 223 AICDFYAK-GWCIKGSSCSFLH 243 68******.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 771 aa Download sequence |
MRGIFIELDS RGHAQVPRKN VYLVDVCNDM DAKRHDKHLR SDTITTTENS EVNKLSSVGE 60 TESNGNIEFA RLSGEPLAKL VEQSHGECKK VESRKCPKDK ETEDQELTVD DKDVEALRNN 120 LPKDSGGSIY NSKVPLCNRG IINAKVSNGL SVTVEDSDIG LENHLVGGNI GSTNPEKEST 180 QTDMQLENGK NQMASRSAAS KKRTRKLSPG ADVNIEQKRP AAAICDFYAK GWCIKGSSCS 240 FLHIKDNAHG SDQHSEEHAG AVYLKKQVQP NQGLQYSADA SKSPVFHHPP NSSFLKDSSL 300 SLKFGISSER TLPRDFTESK GWDVLHEKNK FLLHQREDPL LREHPDCQKL PSTSFDVSFP 360 LNREGSTARN DQPPEFGPSS GGFAKLSVME EPANVACPHL LNDYHSPVLR SSLNSNTTLT 420 KGGILSSRFT TSNDSFPFTP SSSASFFGAQ KMFIIDGEHR VSMPASSFTR SSPFSPSESD 480 NSLINASMNS SDYKTKYSCD DWEPSEPFRP SFFIPSINTA SQYDPFLDSI ELPRKVGGCH 540 NVSLDHQGRE EVSPLSTLHR ASGNYMVPGS SKPEFNDDTS SLSSHNKAED KNEKAGHVQG 600 TDSLMLEAEI QGSSGIDGCN GSRTREDDHM GLIREKNVPK KMKTDTDGKI NLSNIALHEK 660 ESEAESDRQL GDMDGKHLID GNVHKESKAT RHFRSALIEL VKGILRPKWR EGHLKKDVHN 720 TVVKKTLDKV LGTLQPFQVP TTVESVKQYL SSSRPKIEKL VEGYVSKYGK S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 1e-32 | C3H family protein |