PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023003953.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

LSD

Protein Properties

Length: 399aa MW: 43075.5 Da PI: 8.995

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023003953.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.3	2.2e-12	235	259	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YP GA++V+CalC+tV XP_023003953.1 235 CSGCRSILLYPGGATNVCCALCNTV 259 ************************9 PP
2	zf-LSD1	42.4	1.1e-13	274	298	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+Y rGA+sVRC++C+tV XP_023003953.1 274 CRGCRTLLMYARGATSVRCSCCHTV 298 9***********************9 PP
3	zf-LSD1	40.8	3.7e-13	312	336	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L +P+GApsV+Ca+C+ V XP_023003953.1 312 CGNCRTTLIFPYGAPSVKCAICHYV 336 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MNMNIFRKKT SPKDALRTSK REMAVATRGI EREISSLQLE EKKLVAEIKQ TAKTGNEAAT 60 RILARQLVRL RQQITNLQGS RAQIRGVATH TQALYASTSM STGMKGATKA MVAMNKQMAP 120 AKQAKVIQEF QKQSAQLDMT IEMMSESIDE TLDKDEAEEE TEELTNQVLD EIGVDIASQL 180 SSAPKGRIAA RKTENTVTSS ESPDVEELEK RLASLRRMFA RGGSGQAAMQ SQLVCSGCRS 240 ILLYPGGATN VCCALCNTVT SVPPPGTDMA QLICRGCRTL LMYARGATSV RCSCCHTVNL 300 APATNQVAHV NCGNCRTTLI FPYGAPSVKC AICHYVTNVG MSNVRVPIPV HRRNGTISSG 360 MPPASSSQSQ TVVVENPMSV DESGKLVSNL VVGVTTDKR

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MNMNIFRKKT SPKDALRTSK REMAVATRGI EREISSLQLE EKKLVAEIKQ TAKTGNEAAT  60
RILARQLVRL RQQITNLQGS RAQIRGVATH TQALYASTSM STGMKGATKA MVAMNKQMAP  120
AKQAKVIQEF QKQSAQLDMT IEMMSESIDE TLDKDEAEEE TEELTNQVLD EIGVDIASQL  180
SSAPKGRIAA RKTENTVTSS ESPDVEELEK RLASLRRMFA RGGSGQAAMQ SQLVCSGCRS  240
ILLYPGGATN VCCALCNTVT SVPPPGTDMA QLICRGCRTL LMYARGATSV RCSCCHTVNL  300
APATNQVAHV NCGNCRTTLI FPYGAPSVKC AICHYVTNVG MSNVRVPIPV HRRNGTISSG  360
MPPASSSQSQ TVVVENPMSV DESGKLVSNL VVGVTTDKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	2e-71	LSD family protein