PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023003877.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 483aa MW: 52845 Da PI: 8.8772

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023003877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.6	3.4e-06	438	460	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f C+ G+ C+F H+ XP_023003877.1 438 KNCIYFNTPKGCRNGNDCQFKHD 460 68********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MKRTRKSKGV SWANGVNLCQ VKLFSSEDCP SKVGQSSNHL QAKTSRRLPP YTYESNGCPP 60 GFNDTRLKNQ LADVSSIPLI KWNCPPKFAM SCHWRVAAGE ESKELESQNF REMRLLEAVY 120 PRVSDIPPGA TVSTEIKNER YNDSVTPLVP IIPIEEEECE VMEADSAAVG NSATKSFPMM 180 SSNIQLEPAI SKSSIETSAA AASGEMHTEK LPDVGVDVAA AASAALAVLM KSMEQGSMID 240 TNLLIKIFND TTMIQNLTNI LPLYEAAYGS PPSAAIAAPI SLSKPVTASN SLPVPKSDMI 300 QKLPNRSLPH SSVGVPSSVT TLPQVSNIVA SGVKPASVPV RGWTEPQTVK TTIPNARNYS 360 NTGAAPGQVN MEPVSLVRTE GQQLKDLNYY KNLVRQHGEQ KKDGKEQNFE LNGNNHNQQY 420 PNMVHEMKAG NLKGKNKKNC IYFNTPKGCR NGNDCQFKHD MSNPWRINNV LETQSSKRMK 480 LWG

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MKRTRKSKGV SWANGVNLCQ VKLFSSEDCP SKVGQSSNHL QAKTSRRLPP YTYESNGCPP  60
GFNDTRLKNQ LADVSSIPLI KWNCPPKFAM SCHWRVAAGE ESKELESQNF REMRLLEAVY  120
PRVSDIPPGA TVSTEIKNER YNDSVTPLVP IIPIEEEECE VMEADSAAVG NSATKSFPMM  180
SSNIQLEPAI SKSSIETSAA AASGEMHTEK LPDVGVDVAA AASAALAVLM KSMEQGSMID  240
TNLLIKIFND TTMIQNLTNI LPLYEAAYGS PPSAAIAAPI SLSKPVTASN SLPVPKSDMI  300
QKLPNRSLPH SSVGVPSSVT TLPQVSNIVA SGVKPASVPV RGWTEPQTVK TTIPNARNYS  360
NTGAAPGQVN MEPVSLVRTE GQQLKDLNYY KNLVRQHGEQ KKDGKEQNFE LNGNNHNQQY  420
PNMVHEMKAG NLKGKNKKNC IYFNTPKGCR NGNDCQFKHD MSNPWRINNV LETQSSKRMK  480
LWG