PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023003623.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 306aa    MW: 35787.4 Da    PI: 6.863
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023003623.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.32e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien + rqvtfskRr+g++KK +ELSvLCda++a+i+fss+gkl+ey+s
  XP_023003623.1 10 RIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCS 59
                    8***********************************************96 PP
2K-box51.63.9e-18861731299
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++ e+l++ l+ ++k +++Lq ++ ++  edL++ +l++L ++e++L++sl+++R++K+e+l +q+e+l++kek+l++en+++ + ++
  XP_023003623.1  86 NDPEELERLLRIMRKDTDELQLSLQRYTAEDLSTFQLRDLDEIENRLQTSLNRVRARKSEVLQQQVENLRRKEKMLEDENEQIYHLIK 173
                     5567777888899********************************************************************9988766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MGRGKIAIRR IENRTTRQVT FSKRRAGLFK KTHELSVLCD AQIALIVFSS NGKLFEYCSQ  60
ATCSMDQIIR RYQIAIGNPI PDQNMNDPEE LERLLRIMRK DTDELQLSLQ RYTAEDLSTF  120
QLRDLDEIEN RLQTSLNRVR ARKSEVLQQQ VENLRRKEKM LEDENEQIYH LIKEQQMAME  180
EQQQVAAAMM MQKRRSEEEE MRIRRPGDHH QQQQHQQQHH HHHHHGVEDE AVVCMEGDDG  240
DHGDAFGFSN PHIIHPHLQL QLHPHEPNSV LQLGGPLPPP PPPFLHPYRL QPFQPNLHSS  300
TTYATP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-50MIKC_MADS family protein