PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023003356.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 247aa MW: 27339.5 Da PI: 7.0062 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.4 | 4.9e-20 | 20 | 68 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien+ r +tfskRr gi KKA+EL +LC+aev v++fs+ gk + + XP_023003356.1 20 KKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68 68******************************************97776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MADGSTKIKQ TKGRQKIEMK KIENEDDRLI TFSKRRSGIY KKASELATLC GAEVGVVVFS 60 PAGKPFSFAH PCIESVANKF LDENPQPNDN THPLVEAHRR LRINELNQQH NQLLSQLDAE 120 KEKGKALEKL KKVRGNNGRG WWESPTEELA IEELQQVDGS LGELYQNVCH ELKERGVLGS 180 SSYSASNTLG FDHAGREETI PFNILATGAA AASAAGPSSA TYLPDPNPFD YGQQPQPHLP 240 HHHHHHP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-35 | M-type_MADS family protein |