PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023003356.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family M-type_MADS
Protein Properties Length: 247aa    MW: 27339.5 Da    PI: 7.0062
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023003356.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.44.9e-202068149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ien+  r +tfskRr gi KKA+EL +LC+aev v++fs+ gk + +
  XP_023003356.1 20 KKIENEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 68
                    68******************************************97776 PP

Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MADGSTKIKQ TKGRQKIEMK KIENEDDRLI TFSKRRSGIY KKASELATLC GAEVGVVVFS  60
PAGKPFSFAH PCIESVANKF LDENPQPNDN THPLVEAHRR LRINELNQQH NQLLSQLDAE  120
KEKGKALEKL KKVRGNNGRG WWESPTEELA IEELQQVDGS LGELYQNVCH ELKERGVLGS  180
SSYSASNTLG FDHAGREETI PFNILATGAA AASAAGPSSA TYLPDPNPFD YGQQPQPHLP  240
HHHHHHP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-35M-type_MADS family protein