PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023003353.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 548aa    MW: 61160 Da    PI: 6.3254
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023003353.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS412.15.1e-1261785481374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L++cA+a+++ dl++a++++  l +++s +gdp qRl ay++e+L+arl rs+s +ykal+++e s   sse +++++++++++P++kf++
  XP_023003353.1 178 LRDTLIRCAQAIHEADLNAATSFMDVLGQMVSVSGDPAQRLGAYLLEGLRARLERSGSAIYKALKCEEPS---SSELMSYMSILFQICPYFKFAY 269
                     5789*****************************************************************9...99999***************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                       aN  I ea+ +e  +HiiDf+i qG Q+++L++ LasRp+gpp lRiTgv++++s   +   l+ +g++La +A++ g+pf+f++ +a +  +
  XP_023003353.1 270 TSANAFIWEAMVNEPVIHIIDFQIAQGSQYIPLIEDLASRPGGPPVLRITGVDDSQSAhaRGGGLQIVGQKLALLAQSKGIPFQFHA-AAMSGCK 363
                     ******************************************************9988889999***********************.89999** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +e ++Lr++p+EalaVn+ ++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n+++F+ rf+e+l+yy+a+f+s+++  +r++++ri
  XP_023003353.1 364 VEHSDLRIRPEEALAVNFPYALHHMPDESVSTQNHRDRLLRLVKSLSPKVVTIVEQESNTNTSPFFLRFIETLDYYTAMFESIDVARSRDDKQRI 458
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       E+++++r+ivn+vaceg+er+erhe  +kW +r+++aGF+++p+s++++  +k llr ++++ yr+ e +g+l lgWk+r++ + SaWr
  XP_023003353.1 459 RAEQHCVARDIVNMVACEGFERVERHELHGKWMMRMKMAGFTQYPMSSSVTGAVKNLLRDYNEN-YRLLEAEGALNLGWKNRAMATSSAWR 548
                     **************************************************************55.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    
MQASPNRQSS SVIHEMYHQS VQGMDSFYLS HFHVLENNAS PDASSQGNSV ISSSYKDQFF  60
TLESFPATAY LSACNSPSAV SVLSSRSPFS PQGSQTCSSD QHHSFDNTCG SPQSGCSVTD  120
DDYELKHKLK ELEISLLGPE TDIVNSCYCS FRGGENRDAS MARWNWNQMI ETIPRLSLRD  180
TLIRCAQAIH EADLNAATSF MDVLGQMVSV SGDPAQRLGA YLLEGLRARL ERSGSAIYKA  240
LKCEEPSSSE LMSYMSILFQ ICPYFKFAYT SANAFIWEAM VNEPVIHIID FQIAQGSQYI  300
PLIEDLASRP GGPPVLRITG VDDSQSAHAR GGGLQIVGQK LALLAQSKGI PFQFHAAAMS  360
GCKVEHSDLR IRPEEALAVN FPYALHHMPD ESVSTQNHRD RLLRLVKSLS PKVVTIVEQE  420
SNTNTSPFFL RFIETLDYYT AMFESIDVAR SRDDKQRIRA EQHCVARDIV NMVACEGFER  480
VERHELHGKW MMRMKMAGFT QYPMSSSVTG AVKNLLRDYN ENYRLLEAEG ALNLGWKNRA  540
MATSSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein