PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023003086.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family HD-ZIP
Protein Properties Length: 216aa    MW: 24922.2 Da    PI: 8.407
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023003086.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-1957110457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     ++++++eq++ Le  F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  XP_023003086.1  57 KRKLSTEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 110
                     56899***********************************************95 PP

2HD-ZIP_I/II119.81.4e-3856147293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkr+ls+eqvklLE++F  e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+d++  +n++Le+e+ +L+e+l+e
  XP_023003086.1  56 KKRKLSTEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSILLQNSHLESEMVKLNEQLRE 147
                     9****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MATAADDNTL LISNLYSPGV YTQILSQQGV AEGNKPMKRR RRRSKAKEAA GVAGLKKRKL  60
STEQVKLLEM NFGDEHKLES ERKDRLASEL GLDPRQVAVW FQNRRARWKN KKLEEEYSTL  120
KKAHDSILLQ NSHLESEMVK LNEQLREAKN EIQRLVEGSE KIWSNSPTSS ETMDTVPPLA  180
PSWGELFLGE YEDVFYCMQQ QHGNYSQGME WLNLYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13843KRRRRR
23859KRRRRRSKAKEAAGVAGLKKRK
33960KRRRRRSKAKEAAGVAGLKKRK
44061KRRRRRSKAKEAAGVAGLKKRK
54162KRRRRRSKAKEAAGVAGLKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.12e-60HD-ZIP family protein