PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023003086.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 216aa MW: 24922.2 Da PI: 8.407 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.3 | 1.5e-19 | 57 | 110 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ XP_023003086.1 57 KRKLSTEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 110 56899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 119.8 | 1.4e-38 | 56 | 147 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqvklLE++F e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+d++ +n++Le+e+ +L+e+l+e XP_023003086.1 56 KKRKLSTEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSILLQNSHLESEMVKLNEQLRE 147 9****************************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MATAADDNTL LISNLYSPGV YTQILSQQGV AEGNKPMKRR RRRSKAKEAA GVAGLKKRKL 60 STEQVKLLEM NFGDEHKLES ERKDRLASEL GLDPRQVAVW FQNRRARWKN KKLEEEYSTL 120 KKAHDSILLQ NSHLESEMVK LNEQLREAKN EIQRLVEGSE KIWSNSPTSS ETMDTVPPLA 180 PSWGELFLGE YEDVFYCMQQ QHGNYSQGME WLNLYM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 43 | KRRRRR |
2 | 38 | 59 | KRRRRRSKAKEAAGVAGLKKRK |
3 | 39 | 60 | KRRRRRSKAKEAAGVAGLKKRK |
4 | 40 | 61 | KRRRRRSKAKEAAGVAGLKKRK |
5 | 41 | 62 | KRRRRRSKAKEAAGVAGLKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 2e-60 | HD-ZIP family protein |