PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023002939.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 210aa MW: 24029.9 Da PI: 9.7902 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.4 | 1.2e-15 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ t+ kR++g+lKK +EL +LC+++++ i+fs+ XP_023002939.1 11 IVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSP 50 789************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MARKKVKLAY IVNDSARKAT YKKRKKGLLK KLSELTTLCG IQACAIVFSP YDSPPELWPS 60 ALGVQRVLSQ FKNMPEMEQS KKMVNQDTFL RQRIAKAEEQ LKKIRKENRE KEVTRLMFQI 120 LTGPEWLQGL SVVDLNDLSW VIDETLKGIS KRIDCFKRLL PPPPPQTASW VMEVASPQDG 180 MAFVGDDMGL SFEDHSYNTE NVIWSNAFFS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVKLAYIVNDSARKATYKKRK |
2 | 17 | 32 | RKATYKKRKKGLLKKL |
3 | 22 | 26 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-53 | M-type_MADS family protein |