PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023002930.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family HD-ZIP
Protein Properties Length: 726aa    MW: 80034.7 Da    PI: 6.2451
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023002930.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.3e-1955110156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++  ++t++q++e+e +F+++++p+ ++r eL+++lgL+  qVk+WFqN+R+++k
  XP_023002930.1  55 KKRYNRHTQHQIQEMEVFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMK 110
                     577789***********************************************998 PP
2START196.81e-612444651206
                     HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     ela +a++el ++a+a+ep+Wv          +n+ e+l++f  + +      ++ea+r+s++v+m++ +lv +++d   qW++ +     +a+t
  XP_023002930.1 244 ELAVSAMDELTRMAQAGEPLWVPADsksseVVLNESEYLTTFRGGIGpkslgLRTEASRVSAIVFMNHIKLVDIFMDAT-QWSTVFCgivsRAST 337
                     57899****************966656667899*********77776********************************.******99999**** PP

                     EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     +ev+s g      gal++m+ae+q++splvp R+ +fvRy++q+++g+w+++dvS+d  ++ p      +++++pSg+li++++ng+sk+twveh
  XP_023002930.1 338 VEVLSAGlpgncnGALHVMSAEFQVPSPLVPtRENYFVRYCKQHSDGTWAVADVSLDTLTPSPI----PKSRRRPSGCLIQELPNGYSKITWVEH 428
                     *************************************************************994....55556********************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     v++++  +++++r+lv+sgla+gak+wvatl+rqce+
  XP_023002930.1 429 VEVDETGVPSMYRPLVNSGLAFGAKRWVATLDRQCER 465
                     ***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    
MFDPDMFDTH HHMLDMAFNT SENELENVRD DDFEAKSGAE ILEEGCGSDQ QRSKKKRYNR  60
HTQHQIQEME VFFKECPHPD DKQRMELSRE LGLEPLQVKF WFQNKRTQMK AQHERHENAM  120
LKADNEKLRA ENIRYREAFA HSTCPNCGSS TALGEMSFED QHLRIENSRL RDEIDRMNGY  180
APKCAKPLPS SYYHLPSNAP TRSLDLGITN FGQQSCFVGE MYGTADFLRS ISRPSEADKP  240
VIVELAVSAM DELTRMAQAG EPLWVPADSK SSEVVLNESE YLTTFRGGIG PKSLGLRTEA  300
SRVSAIVFMN HIKLVDIFMD ATQWSTVFCG IVSRASTVEV LSAGLPGNCN GALHVMSAEF  360
QVPSPLVPTR ENYFVRYCKQ HSDGTWAVAD VSLDTLTPSP IPKSRRRPSG CLIQELPNGY  420
SKITWVEHVE VDETGVPSMY RPLVNSGLAF GAKRWVATLD RQCERLATSM ATTIATGELR  480
VMSSIEGRKS MLKLAERMVT SFCAGVGASS IHAWTALPAA GSDDVRVVTR KSTDEPGRPP  540
GVVLSAATSF WIPVSPKVVF DFLRKEKSRS EWDILSNRGL VQEMANIANG RHSGNCVSLL  600
RVNSANSSQS NMLILQESCT DSTGSYVVYA PVDTVAMNVV LSGCDPDYVA LLPSGFAILP  660
DGPAGTNGRG ILEVGSGGSL ITVAFQILVD SVPTARLSIG SVATVNSLIK CTVERIRAAV  720
MRETHD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein