PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023002786.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | MYB | ||||||||
Protein Properties | Length: 1023aa MW: 114669 Da PI: 4.8495 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43 | 1e-13 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l XP_023002786.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.7 | 1.7e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l XP_023002786.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1023 aa Download sequence |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRHR KRKRKGIDYN AEIPFEKRPP PGFFDVGEED RPVEQPKFPT 240 TIEELEGKRR IDVESQLRKQ DIAKNKIAQR QDAPSAVLQA NKLNDPEMVR KRSKLMLPAP 300 QIADHELEEI AKMGYASDLL AGNEVLAEGS GATRALLANY AQTPRQGMTP FRTPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP RKKEIQTPNP MLTPSATPGG 420 AGLTPRSGMT PARDAYSFGV TPKGTPIRDE LHINEDTDTH DSAKLESQRQ ADLRRNLSLG 480 LGNLPQPKNE YQVVMQPIPE DKEEPEEMIE EDMSDRIARE RAEEEARQQA LLRKRSKVLQ 540 RELPRPPTAS LELIRNSLMR ADGDKSSFVP PTPIEQADEM IRKELLALLE HDNLKYPIDE 600 KVSKEKKKGS KRTGNRPAVA IPTIDDFEET EMQEADYLIK EEARYLCVAM GHENEPLEEF 660 VEAHKTCLND LMYFPTRSAY GLSSVAGNHE KLAALQDEFE YVKKKMDDDT EKAVRLEKKV 720 KVLTHGYETR SKQSLWPQIE ATFKQIDTAA TELECFEALK KQEMLAASHR ISGIWEEVQK 780 QKELERTLQL RYGNLFADLE KMTKIMDERK AQALKEEEIA AENRALQLAE AEANRTVGEN 840 ADSSEAVSAL AVDGENSMPP NELTGEQQNS SLGHEHEASN AMDIDAEKES VAASSDIGLP 900 DDKLPSAVAE NDASSSEKAF DDSDKSQTIN VPSQELVVPP ANGTPDVAVT VENKISNDLV 960 DGTAPTENAE CSTDIVKEGK DVETQQPVIE AGNSDVNSTN LDSSNNDVVE LPRGDEEATE 1020 SNV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 205 | KRRELKAAGIDTRHRKRKRK |
2 | 200 | 205 | RKRKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | MYB family protein |