PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023002196.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 1012aa MW: 112789 Da PI: 4.9046

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023002196.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.1	2e-18	38	84	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l XP_023002196.1 38 KGQWTAEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 84 799**************************9.**********986 PP
2	Myb_DNA-binding	66.8	4e-21	90	136	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++v++v+++G++ W+tIa++++ gR +kqc++rw+++l XP_023002196.1 90 KGPWSKEEDEIIVELVQKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 136 79****************************.***********97 PP
3	Myb_DNA-binding	47.6	3.7e-15	142	184	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_023002196.1 142 KEAWTQEEEIALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 184 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1012 aa Download sequence
MESDPALCTP LDAPGDSCQN IRSIHSRRTS GPTRRSTKGQ WTAEEDEILR KAVQRFKGKN 60 WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDEI IVELVQKYGP KKWSTIAQHL 120 PGRIGKQCRE RWHNHLNPAI NKEAWTQEEE IALIRAHQIY GNRWAELTKF LPGRTDNAIK 180 NHWNSSVKKK LDSYLASGLL EQYQPLHCTL QSSLPKHSSS RVQSSIDDSS LRGTETEDIS 240 EVSQTSAIVA CSTTVPRTEE EGQLGEAAFL KEEPISTPHC PEQYNASLDN ITFSIPEMFG 300 ELDCYVKPPD QNFSQDCRTS STEDNRYNLY ELPNISSLEL GRELSQSQAI GSQEVENVPH 360 QTSAGLNAST VENMARGSDK SEQMLISDYE CCRVLFSDGI NNESFPSENT SDASNMVELS 420 GYTHPLHCQS LSIEMQESRR NLSMQSYHHS RTDVLDNSSS QPFLAPLLVS ANDDTYVYTS 480 EASHLFATLE RELVANEHDG FIYTNESAES PPEDGTKDAD LQKQQGSNDP SKLVPVNTFS 540 SEPKTAQSFP SFRERENTQS DQQDVGALCY EPPRFPSLDV PFLSCDLAAP STSDMQQEYS 600 PLGIRQLMMS SMNCLTPFRL WNSPSRDDSP DAVLKSAAKT FTNTPSILKK RHREFFSPLS 660 EKQRDKKQEI DIGISRTSHP TSNSRDSEDK ENIIPVEEGR QEKQSDGSNI LLSKCPERNL 720 DSCSFLENKR QELDDAVKTE GVDSVGQTVQ PPSRILIECD MNDSLLYSTD HDGVRADTNR 780 GSSEEISESQ CRTSTALQDL DFPSKLSDDQ CTRANCSIAN ETSHGSHPPT APPEIIGDDA 840 SKETSIETLF GGTPFKRSIE SPSAWKSPWF INSFLFGSRM DSDVAMEEVG FFMSPGDRSY 900 DAIGLMKQVG EHTAAACANA QEVLGGETPQ SLLKGERRKY ENRIKEKSPA TNSRQGVVHS 960 TSAPDILKER RILDFSECGT PVKGTENGKS SSASATGRSF SSPSSYLLKG CR

Sequence ? help Back to Top

Protein Sequence Length: 1012 aa Download sequence

MESDPALCTP LDAPGDSCQN IRSIHSRRTS GPTRRSTKGQ WTAEEDEILR KAVQRFKGKN  60
WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDEI IVELVQKYGP KKWSTIAQHL  120
PGRIGKQCRE RWHNHLNPAI NKEAWTQEEE IALIRAHQIY GNRWAELTKF LPGRTDNAIK  180
NHWNSSVKKK LDSYLASGLL EQYQPLHCTL QSSLPKHSSS RVQSSIDDSS LRGTETEDIS  240
EVSQTSAIVA CSTTVPRTEE EGQLGEAAFL KEEPISTPHC PEQYNASLDN ITFSIPEMFG  300
ELDCYVKPPD QNFSQDCRTS STEDNRYNLY ELPNISSLEL GRELSQSQAI GSQEVENVPH  360
QTSAGLNAST VENMARGSDK SEQMLISDYE CCRVLFSDGI NNESFPSENT SDASNMVELS  420
GYTHPLHCQS LSIEMQESRR NLSMQSYHHS RTDVLDNSSS QPFLAPLLVS ANDDTYVYTS  480
EASHLFATLE RELVANEHDG FIYTNESAES PPEDGTKDAD LQKQQGSNDP SKLVPVNTFS  540
SEPKTAQSFP SFRERENTQS DQQDVGALCY EPPRFPSLDV PFLSCDLAAP STSDMQQEYS  600
PLGIRQLMMS SMNCLTPFRL WNSPSRDDSP DAVLKSAAKT FTNTPSILKK RHREFFSPLS  660
EKQRDKKQEI DIGISRTSHP TSNSRDSEDK ENIIPVEEGR QEKQSDGSNI LLSKCPERNL  720
DSCSFLENKR QELDDAVKTE GVDSVGQTVQ PPSRILIECD MNDSLLYSTD HDGVRADTNR  780
GSSEEISESQ CRTSTALQDL DFPSKLSDDQ CTRANCSIAN ETSHGSHPPT APPEIIGDDA  840
SKETSIETLF GGTPFKRSIE SPSAWKSPWF INSFLFGSRM DSDVAMEEVG FFMSPGDRSY  900
DAIGLMKQVG EHTAAACANA QEVLGGETPQ SLLKGERRKY ENRIKEKSPA TNSRQGVVHS  960
TSAPDILKER RILDFSECGT PVKGTENGKS SSASATGRSF SSPSSYLLKG CR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	0.0	MYB family protein