PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023001530.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 467aa MW: 51685 Da PI: 4.765

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023001530.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.7	3.4e-12	135	157	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f+++tGtCk+G+ CkF+H+ XP_023001530.1 135 EDCAFYLKTGTCKFGSFCKFNHP 157 89********************9 PP
2	zf-CCCH	32	2.1e-10	182	203	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +C+f++rtG Ck+Gd C+++H XP_023001530.1 182 TECKFYMRTGGCKFGDACRYNH 203 68******************** PP
3	zf-CCCH	43.2	6.3e-14	226	250	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+f++rtG CkyG++CkF+H+ XP_023001530.1 226 DEKECPFYMRTGSCKYGANCKFNHP 250 6789********************9 PP
4	zf-CCCH	23.3	1.2e-07	351	377	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++tG Ck+ Ck++H++ XP_023001530.1 351 PGQPDCSYFLKTGDCKFKTLCKYHHPK 377 5789*********************96 PP
5	zf-CCCH	36.6	7.4e-12	399	423	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++r+G+Ck+G++CkF H++ XP_023001530.1 399 QNICTYYSRYGICKFGPSCKFDHPM 423 679********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MEPSEAVSVP NHCEVSASEF QSSSQFRSSV LDPVATDDRI HAELQELDLK DEKEETVKDF 60 DDGGEWEVEK NPDEGEGNDA KKIGESDRDR SVRNDDGDDD NDEEVHAADG DGGEVENKGD 120 WRGKNNQYPV RPEAEDCAFY LKTGTCKFGS FCKFNHPVRK KNQVVSEKLK YEDDSARLAG 180 KTECKFYMRT GGCKFGDACR YNHTRPKALA SSILELNFLG LPIRPDEKEC PFYMRTGSCK 240 YGANCKFNHP DPTTVVVPES PSGYNNGVPL QGGSQSHIPS WNSPRVLNEA TAFVPAVIPP 300 SPDSEWNGYQ APVYPSEISV LPPPTYVVIN IASETDIYPS HQQAEEYPER PGQPDCSYFL 360 KTGDCKFKTL CKYHHPKNRN PKLPACTLND KGLPLRPDQN ICTYYSRYGI CKFGPSCKFD 420 HPMLPASSTV GVGDLEQQPR YGNFSAAEGA EMAGGGSRNS PTVEQSA

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MEPSEAVSVP NHCEVSASEF QSSSQFRSSV LDPVATDDRI HAELQELDLK DEKEETVKDF  60
DDGGEWEVEK NPDEGEGNDA KKIGESDRDR SVRNDDGDDD NDEEVHAADG DGGEVENKGD  120
WRGKNNQYPV RPEAEDCAFY LKTGTCKFGS FCKFNHPVRK KNQVVSEKLK YEDDSARLAG  180
KTECKFYMRT GGCKFGDACR YNHTRPKALA SSILELNFLG LPIRPDEKEC PFYMRTGSCK  240
YGANCKFNHP DPTTVVVPES PSGYNNGVPL QGGSQSHIPS WNSPRVLNEA TAFVPAVIPP  300
SPDSEWNGYQ APVYPSEISV LPPPTYVVIN IASETDIYPS HQQAEEYPER PGQPDCSYFL  360
KTGDCKFKTL CKYHHPKNRN PKLPACTLND KGLPLRPDQN ICTYYSRYGI CKFGPSCKFD  420
HPMLPASSTV GVGDLEQQPR YGNFSAAEGA EMAGGGSRNS PTVEQSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-127	C3H family protein