PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023001524.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 349aa MW: 39469.9 Da PI: 6.9819

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023001524.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++++G g+W+++++ g+ R++k+c++rw +yl XP_023001524.1 14 KGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	42.4	1.6e-13	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++ +++ lG++ W+ Ia+ ++ +Rt++++k++w++ XP_023001524.1 67 RGMFSQQEQDLIISLHQVLGNR-WAQIAAQLP-RRTDNEIKNFWNS 110 788*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQQEQDLIIS LHQVLGNRWA QIAAQLPRRT DNEIKNFWNS SLKKKLMKQG 120 IDPNTHKPII NIHEIKEKKI FEDKEFTEIP PVEGLGSGIS AVNNQGPVFL LGGVDYYDGG 180 LTAAPSRDHF MNKQPLDSLC YFEFQTGFDP YNSSVQNLSD TNSNFGFSSM PSLTNSDHGS 240 LSGTEFSDNS GSNMSNYGGF YMNNNSNNNG VDNSTFCSWE SENKSDIFFQ NHVNNNTNNN 300 NNNHNNNGIK SEELNPSSSV LDGQLIQRYP LASLSQDIVR CNFDAFYHL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEQDLIIS LHQVLGNRWA QIAAQLPRRT DNEIKNFWNS SLKKKLMKQG  120
IDPNTHKPII NIHEIKEKKI FEDKEFTEIP PVEGLGSGIS AVNNQGPVFL LGGVDYYDGG  180
LTAAPSRDHF MNKQPLDSLC YFEFQTGFDP YNSSVQNLSD TNSNFGFSSM PSLTNSDHGS  240
LSGTEFSDNS GSNMSNYGGF YMNNNSNNNG VDNSTFCSWE SENKSDIFFQ NHVNNNTNNN  300
NNNHNNNGIK SEELNPSSSV LDGQLIQRYP LASLSQDIVR CNFDAFYHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	3e-76	MYB family protein