PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023001476.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 20028.2 Da PI: 8.4494 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63 | 3.4e-20 | 11 | 57 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +++ rqvtfskRrng++KKA+ L +LC+ e+a+i+fs+ gk + + XP_023001476.1 11 VKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSF 57 677889************************************98766 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 177 aa Download sequence |
MGRRKIEMKM VKDRGSRQVT FSKRRNGLFK KANDLATLCG LEIAIIVFSP GGKAFSFGNP 60 NVEEVVDRYL NRKSEPIPPA SEGMFEKENE ELIDLVKQLQ LEKKKGEMLE KEMKSRGESI 120 KIEDLDLDEL LKLKESLERL RKNVRMKESE LEASSSLLLL ANEPVVEADA SASKTSI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G34440.1 | 7e-31 | M-type_MADS family protein |