PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023001163.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 422aa MW: 47029.7 Da PI: 8.7224

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023001163.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.9e-06	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_023001163.1 64 YVCEICNQGFQRDQNLQMHRRRH 86 9*********************9 PP
2	zf-C2H2	17.4	1.3e-05	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_023001163.1 141 WVCEKCSKAYAVQSDYKAHLKTC 163 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MIANTATSAS LSLPSSEPYS CLENGSSNSN SNSNKRKRRP AGTPDPDAEV VSLSPKTLLE 60 SDRYVCEICN QGFQRDQNLQ MHRRRHKVPW KLLKRESPVV RKRVFVCPEP SCLHHDPCHA 120 LGDLVGIKKH FRRKHSNHKQ WVCEKCSKAY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE 180 SFIEHQDACN MGHLRQESQT LHPACLSRTA SSRSPPSDTN FTAPPTAIFL APTDDSINNN 240 NNNNNNNHSH HNLDLKLSTT SSNEGSSTQL QLLIGSCDFG DKKKRVQLLD NEKGGGRGAG 300 GVREEAREEL RVAMAEKAYA EEARQQVKRQ IEMAEEEFVN AKRMRQQAQV ELDKATALKQ 360 AAIKQINSTL LEITCQACQK QFQAKPTTTT TTAPADHDTS VAFSYVSSVI TTEVNKYAER 420 VL

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MIANTATSAS LSLPSSEPYS CLENGSSNSN SNSNKRKRRP AGTPDPDAEV VSLSPKTLLE  60
SDRYVCEICN QGFQRDQNLQ MHRRRHKVPW KLLKRESPVV RKRVFVCPEP SCLHHDPCHA  120
LGDLVGIKKH FRRKHSNHKQ WVCEKCSKAY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE  180
SFIEHQDACN MGHLRQESQT LHPACLSRTA SSRSPPSDTN FTAPPTAIFL APTDDSINNN  240
NNNNNNNHSH HNLDLKLSTT SSNEGSSTQL QLLIGSCDFG DKKKRVQLLD NEKGGGRGAG  300
GVREEAREEL RVAMAEKAYA EEARQQVKRQ IEMAEEEFVN AKRMRQQAQV ELDKATALKQ  360
AAIKQINSTL LEITCQACQK QFQAKPTTTT TTAPADHDTS VAFSYVSSVI TTEVNKYAER  420
VL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	40	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-130	C2H2 family protein