PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023001016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 844aa MW: 93011 Da PI: 6.6831 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.6e-18 | 18 | 76 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+++Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_023001016.1 18 KYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76 6789*****************************************************97 PP | |||||||
2 | START | 173.9 | 1e-54 | 166 | 373 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++ +++l vis+g g+++l XP_023001016.1 166 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPT-KVAEILKDRLSWFRDCRCVDVLSVISTGngGTIELL 259 68999*****************************************************.8999999999************************** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s + p+ ss+vRae+lpSg+li+ +++g s +++v+hvdl++++++++lr+l+ XP_023001016.1 260 YTQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPSgppPSSFVRAEMLPSGYLIRACEDG-SLIHIVDHVDLDAWSVPEVLRPLY 353 ***************************************99999888899********************.************************ PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s+ + +++++va+l++ ++ XP_023001016.1 354 ESTKILAQRRTVAALRYVRQ 373 ***************99765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 844 aa Download sequence |
MALAMHRDSL NKQMDTSKYV RYTPEQVDAL ERVYAECPKP SSLRRQQLIR ECPILSNIEP 60 KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQKQVSR LVYKNGYMRQ 120 QLRTASGTTT DNSCESVVMS GQHHQQQNPT KHTQKDANNP AGLLAIAEET LAEFLSKATG 180 TAVDWVQMIG MKPGPDSIGI VAVSRNCNGV AARACGLVSL EPTKVAEILK DRLSWFRDCR 240 CVDVLSVIST GNGGTIELLY TQTYAPTTLA AARDFWTLRY TTSLEDGSLV ICERSLTSST 300 GGPSGPPPSS FVRAEMLPSG YLIRACEDGS LIHIVDHVDL DAWSVPEVLR PLYESTKILA 360 QRRTVAALRY VRQIAHEASG EIQLGGGRQP AVLRTFSQRL SRGFNDAVNG FVDDGWSLMD 420 SDGVEDVTVV VNSSPNKFIG SQYNQSLYPT FGGVLCAKAS MLLQNVPPAL LVRFLREHRS 480 EWADYGVDAY SAACLKSSAY AVPCARPGGF PSGQVILPLA HTVENEEFLE VVRLEGHAMF 540 PEEAALGGRD MYLLQLCSGV DESTVGSCAQ LVFAPIDESF ADDAPLLPSG FRVIPLESKA 600 DASAATRTLD LASTLEVRPG SARPGGETDA TNYNLRSVLT IAFQFTFENH MRDSVAAMAR 660 QYVRTVVASV QRVAMAIAPS QLSSHIGPKS LPSSPEALTL SQWIVRSYRI HTGAELFQVE 720 SQSHDAILKQ LWHHSDTILC CSVKTNASPV FTFANQAGLD MLETTLVALQ DITLDKILED 780 AGRKILCSEF SKIMQQGFAY LPAGICISSM GRPVSYEQAI AWKVLNDDDV HHCLAFMFVN 840 WSFM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |