PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023000708.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family M-type_MADS
Protein Properties Length: 367aa    MW: 41482.9 Da    PI: 6.0621
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023000708.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.99.6e-221053245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    + e++  rqvtfskR+ngi+KKA+EL +LCd+++ +++fs+tgk
  XP_023000708.1 10 KLESTGSRQVTFSKRKNGIMKKAKELAILCDIDIVLLMFSPTGK 53
                    5688999************************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    
MGRVKLKIKK LESTGSRQVT FSKRKNGIMK KAKELAILCD IDIVLLMFSP TGKPTLYQGE  60
RSSIEEVITK FAELTPQERA KRKLESLEAL KKTFKKLDHD VNIKDFVGSS SQDFEQELIN  120
EVTVLRDQIG EAHKRLSYWR NPDSISNIQQ LQQMEGLIRE SLNQTRLHKE NLRRHQLLSQ  180
EFTGQYPGGE MSLPLLMDEM QGIQPLLWLP NYGTQQITLP NEPNFLQPGD VECSFPSYPS  240
YYNPGKQIEA GVSGQVDSMP QGDGGLNELS GTSCSTLQLG EQYQYPPTCD GSSFQDEKRL  300
NLEMEMNLHG NYVDNQLNGK LDLSRSLYDD EQHPWGSIPG PCSIPMYQSS NAYHHHVGSL  360
LTAPSKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.13e-92M-type_MADS family protein