PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023000105.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 446aa MW: 48669.1 Da PI: 9.0312

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023000105.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_023000105.1 69 FVCEICNKGFQRDQNLQLHRRGH 91 89*******************88 PP
2	zf-C2H2	11.4	0.00098	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_023000105.1 146 WKCDKCSKKYAVQSDWKAHSKIC 168 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MMKGSFLSQQ QQQLLMDQTL SNLTSPSSPN NQTQFFSPPP PKRKRNLAGN PDAEVIALSP 60 KTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIKKKV YVCPEPSCVH 120 HDPLRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT KEYKCDCGTL 180 FSRRDSFITH RAFCDALADE SARSAMELSP LISNYNNLQE LLFKRGFGGG DSSNNDDNNL 240 KTEIPSWLQP DEIFVGSTHQ TLNPNPSGLV PPCVSSPHIS ATALLQKAAQ MGATMSSPLM 300 GRTHEVVHVS TGNYGEMGIR SREGGMGVSC SSISCCTDYG NKAAAVSAAV TATATPSGPT 360 TFLHDMINSL ASASHPFHQD SSAFNAAAIA AMHHHTAAGR SDGLTRDFLG LRSLSHGDIL 420 SITGFGNCIV PNSATLQSQT QKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MMKGSFLSQQ QQQLLMDQTL SNLTSPSSPN NQTQFFSPPP PKRKRNLAGN PDAEVIALSP  60
KTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIKKKV YVCPEPSCVH  120
HDPLRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT KEYKCDCGTL  180
FSRRDSFITH RAFCDALADE SARSAMELSP LISNYNNLQE LLFKRGFGGG DSSNNDDNNL  240
KTEIPSWLQP DEIFVGSTHQ TLNPNPSGLV PPCVSSPHIS ATALLQKAAQ MGATMSSPLM  300
GRTHEVVHVS TGNYGEMGIR SREGGMGVSC SSISCCTDYG NKAAAVSAAV TATATPSGPT  360
TFLHDMINSL ASASHPFHQD SSAFNAAAIA AMHHHTAAGR SDGLTRDFLG LRSLSHGDIL  420
SITGFGNCIV PNSATLQSQT QKPWQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-101	C2H2 family protein