PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022998979.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 330aa MW: 37590.3 Da PI: 10.0054

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022998979.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.7	9.3e-16	51	110	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g XP_022998979.1 51 SRFRGVSRHRWTGRFEAHLWDkGSWNPtqrKKgKQVYLGAYDEEESAARAYDLAALKYWG 110 789****************988855556447***********************98 PP
2	AP2	57.3	3.8e-18	153	204	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++gt eeAa+a++ a+ +++g XP_022998979.1 153 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYRG 204 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MDFTVLNSEF CSFKTDSVAV NCIRRRRRSC KGSRQPPKSA ADQSTATKRS SRFRGVSRHR 60 WTGRFEAHLW DKGSWNPTQR KKGKQVYLGA YDEEESAARA YDLAALKYWG TSTFTNFSVS 120 DYEKEIKIMK SVTKEEYLAS LRRRSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL 180 YLGTYGTQEE AARAYDIAAI EYRGLNAVTN FELSSYIRWL NPNPMQPSPP LSFSIDTNTT 240 SNSAFIPTAP RTSPRTALGL LLKSSLFKHL MEKNVVNVNG DAEMEEEYPM DEGRALLSFV 300 DPNPYLHLQY SCQGTTNLSL STPFHYFALV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	85	PTQRKKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-80	AP2 family protein