PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022998797.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 359aa MW: 40669.1 Da PI: 6.507 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.5 | 1.2e-20 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++ rqvt+skRr+gilKKA EL +LCd+++ +++fs+tg+ XP_022998797.1 10 KLESTGSRQVTYSKRRHGILKKARELAILCDIDIVLLMFSPTGR 53 5688999***********************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence |
MGRVKLKIKK LESTGSRQVT YSKRRHGILK KARELAILCD IDIVLLMFSP TGRPTLYQGE 60 RSNIEEVITK FSQLTPQERA KRKLESLEAL KKTFKKLDHD VNIKDFVGSS SQDSEELTNE 120 VSILRDQIAD SHKRLSCWRN LDNINNIEHL QKMEDLARES LNQMRLHKEN VRRHQILSQD 180 FTCQYPGGGM SLPLMMDEMQ STQPLLWLPN YCTQQITLPN EPSFLQPGDV ECSMATSFSS 240 FPSFFNPGKQ LEAGISGQVD SMPQGDGGLN ELSGTSCSTL QLGDQYPYPT CDGSNFQDDK 300 KLNLEMEMNL HANCINNQLN GKLELSRALY GDDQHPWASI PGPCSIPMYQ SNAYHHQPN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 2e-96 | M-type_MADS family protein |