PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_022998470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 313aa MW: 35714.3 Da PI: 5.1239 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.9 | 3e-15 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ G g+W+ Iar g+ R++k+c++rw +yl XP_022998470.1 20 KGLWSPEEDEKLMRYMLSNGQGCWSDIARNAGLQRCGKSCRLRWINYL 67 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.7e-16 | 73 | 117 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E+el+v+++ + G++ W+ Ia++++ gRt++++k++w++ XP_022998470.1 73 RGAFSPQEEELIVHLHSLIGNR-WSQIASRLP-GRTDNEIKNFWNST 117 89********************.*********.***********986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 313 aa Download sequence |
MRKPEAGLGK ENVEKNKYRK GLWSPEEDEK LMRYMLSNGQ GCWSDIARNA GLQRCGKSCR 60 LRWINYLRPD LKRGAFSPQE EELIVHLHSL IGNRWSQIAS RLPGRTDNEI KNFWNSTLKK 120 RLKNNLSSTP FSNHEPLDPR LDMMFGGIMA MQEHDIMSMN MSMDSSSTSS SSSQLPFSAT 180 GHNSLDGSSM PFLDNNFEMA SMVGATNGFL QAPGGCATEM GMRMIMEQRL SYGSLEAQRS 240 MELEREVLCL PHEEMNNRSN FDEYLGTNEQ NLNMEEMFGD MESHGQVQES LKMGNEWDLE 300 SFMQDISSFP HFL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12870.1 | 4e-72 | MYB family protein |