PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022998315.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 505aa MW: 55409 Da PI: 8.7128

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022998315.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022998315.1 84 FVCEICNKGFQRDQNLQLHRRGH 106 89*******************88 PP
2	zf-C2H2	12.7	0.00037	161	183	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_022998315.1 161 WKCDKCSKRYAVQSDWKAHSKTC 183 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MIKSLLFQAQ AMEENLSNLT SASGEASSCS GNRSDQIPTN YSGGNYFSAP PPLPKRKRSL 60 PGNPDPDAEV VALSPKTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKPRANKEV 120 IRKKVYVCPE ISCVHHDPSR ALGDLTGIKK HFSRKHGEKK WKCDKCSKRY AVQSDWKAHS 180 KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARTI TANPILMTNN NPPLLPNPIS 240 SISHLNFQAQ THFNPLDINS FALKKEHQNP QSSTNFIPPW LANHSQDLNP LIINPNHLGQ 300 TSLNLPTASS SSPSPHMSAT ALLQKAAQMG ATMSSNNNAE APHTIIRPQH SQDHHVSDSS 360 ATTNNATCNF GLNLSSSSSS RDNQNQVLMG TEAGPGLSPA LPLYRNKTLL QTTFINNNTT 420 TFSPSAFEGA SFEIDEFGGM LKKDEIFNDN PANEGLSTRD FLGLRAMSHT EFLSNIAAAG 480 YGNCINGGAG QTPQTQIQNQ PSWQG

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MIKSLLFQAQ AMEENLSNLT SASGEASSCS GNRSDQIPTN YSGGNYFSAP PPLPKRKRSL  60
PGNPDPDAEV VALSPKTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKPRANKEV  120
IRKKVYVCPE ISCVHHDPSR ALGDLTGIKK HFSRKHGEKK WKCDKCSKRY AVQSDWKAHS  180
KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARTI TANPILMTNN NPPLLPNPIS  240
SISHLNFQAQ THFNPLDINS FALKKEHQNP QSSTNFIPPW LANHSQDLNP LIINPNHLGQ  300
TSLNLPTASS SSPSPHMSAT ALLQKAAQMG ATMSSNNNAE APHTIIRPQH SQDHHVSDSS  360
ATTNNATCNF GLNLSSSSSS RDNQNQVLMG TEAGPGLSPA LPLYRNKTLL QTTFINNNTT  420
TFSPSAFEGA SFEIDEFGGM LKKDEIFNDN PANEGLSTRD FLGLRAMSHT EFLSNIAAAG  480
YGNCINGGAG QTPQTQIQNQ PSWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	124	KLKPRANKEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	1e-112	C2H2 family protein