PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022996369.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | ARF | ||||||||
Protein Properties | Length: 716aa MW: 79176.5 Da PI: 8.458 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.5 | 5.9e-24 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + ++ XP_022996369.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLR--SK 202 89****************************997556555..8************************************************4..47 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_022996369.1 203 NGDLCVGIRRA 213 8888****996 PP | |||||||
2 | Auxin_resp | 116.4 | 2.5e-38 | 280 | 363 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++++FevvY+Prast+eF+vk+++v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ XP_022996369.1 280 AAALAASGQAFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 363 678899****************************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 716 aa Download sequence |
MKEADKNLDP QLWHACAGGM VQMPAINSKV FYFPQGHAEH AQAAVDFTSS LRIPPLIPCR 60 VLAVKFLADN ETDEVYGNVR LVPLANNEIN CEEEGGFGSN GSENNMEKPA SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDYTADPPVQ TVIAKDVHGE VWKFRHIYRG TPRRHLLTTG 180 WSSFVNQKKL VAGDSIVFLR SKNGDLCVGI RRAKRAIGCA ADHPYGWNPG GGNSIPSYGG 240 LTMFLRDEDN KLSRKGSLSS NGGGNLRGKG KVRPESVIEA AALAASGQAF EVVYYPRAST 300 PEFCVKASSV RAAMRIQWCS GMRFKMPFET EDSSRISWFM GTISSVQVAD PIRWPNSPWR 360 LLQVTWDEPD LLQNVKRVSP WLVELVSNMP VIQLSPFSPP RKKFRLPQHP DFPLDSQFQL 420 SSFPSNTLRP SSPMCCLSDN TSVGIQGARH TQFGISSSDF HLNNKLQLGL LPSSFQQLDF 480 HSRISHRLVT DHRGSGSQNS SALLSVENTG PKLERSDSVK KYQFLLFGQP ILTEQQITRS 540 SSGDVHSPQT EKSSLDMNLE RVKFLSDGSG YTFKQQQISP NKSPEAGFPW YQGYEATELG 600 LDTGHCKVFM ESEDVGRTLN LSVIGSYEEL YRRLANMFGM EKPDILSHVL YQDATGAVKQ 660 AGDKPFSDFI KTARRLTILT DSGSDKMVGR RLMDGMRSGE NGLDSSNKTG PLSIFA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | ARF family protein |