PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022996092.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family LSD
Protein Properties Length: 144aa    MW: 14999.6 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022996092.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.31.2e-132953125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+lL YP GA+sV+Ca+C++V
  XP_022996092.1 29 CSGCRNLLLYPVGATSVCCAVCNAV 53
                    ************************9 PP

2zf-LSD146.84.8e-156892125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggC+tlL+Y rGA+sV+C++C+tV
  XP_022996092.1 68 CGGCHTLLMYIRGATSVQCSCCHTV 92
                    ************************9 PP

3zf-LSD141.42.4e-13106130125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Cr lL+Y +GA+sV+C++C++V
  XP_022996092.1 106 CGNCRMLLMYQYGARSVKCSVCNFV 130
                     ***********************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    
MPPVPLAPYP TPPPPYTPPA NTAQSQLVCS GCRNLLLYPV GATSVCCAVC NAVTAVPPPG  60
TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVSCGNCR MLLMYQYGAR  120
SVKCSVCNFV TSVGMSTSAV DQKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-65LSD family protein