PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022995184.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 684aa MW: 74114.4 Da PI: 7.7668

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022995184.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.6e-08	275	295	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg XP_022995184.1 275 PCPEFRK-GACPKGDSCEYAHG 295 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
MCSGSKNKVA SSNSAMDAKF QKLNDGSFFS ASSILLELSA SGDVEGFKRE VEENGLDVDE 60 PSCWYGRGIG SKKMAFEKRT PLMIAAMFGS SKVVKHLIGT GKVDVNRACG SDMVTALHCA 120 TAGGSGSSLE TIKLLLNGSA NVDCVDANGR KPVDLIVSAC RMVSNSGRKA MEMLLRGDGM 180 AGEGDLSLYL EEDQQKIIAS PSAKEGSDKK EYPVDVSLPD INSGMYGTDD FRMYTFKVKP 240 CSRAYSHDWT ECPFVHPGEN ARRRDPKKYP YSCVPCPEFR KGACPKGDSC EYAHGVFESW 300 LHPAQYRTRL CKDETGCNRK VCFFAHKPED LRPVYASTGS GMPSPRSLSS SAADMSTMST 360 LTLGSSSLSL PTTSTPPMSP LASVSSPTNG NLWQNKINLT PPALQLSGSR LKTTLSARDL 420 DFEMELLGLE KNASQLQHQQ QLIDEISRLS TPNYWSGDVS RSAELKPSNH DDMFGSLDSS 480 LLSQLQGGSL KTSQVQSPTG MQMRQNMNQL RASYPANLAS SPVKKPSSFG FDSSSAVAAA 540 VMNSRSAAFA KRSQSFIDRA AVPRLPGFTT AANSAATMSS HLSGWNSPDG KLDWGVHSNN 600 LNKLQKSASF AIRNNGIGGP TTFEPSAGEP DVSWVNSLVK DVPSDSFEQF GPKKRQYNLK 660 REISEMLPSW MEQQLYAEQE QIVA

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

MCSGSKNKVA SSNSAMDAKF QKLNDGSFFS ASSILLELSA SGDVEGFKRE VEENGLDVDE  60
PSCWYGRGIG SKKMAFEKRT PLMIAAMFGS SKVVKHLIGT GKVDVNRACG SDMVTALHCA  120
TAGGSGSSLE TIKLLLNGSA NVDCVDANGR KPVDLIVSAC RMVSNSGRKA MEMLLRGDGM  180
AGEGDLSLYL EEDQQKIIAS PSAKEGSDKK EYPVDVSLPD INSGMYGTDD FRMYTFKVKP  240
CSRAYSHDWT ECPFVHPGEN ARRRDPKKYP YSCVPCPEFR KGACPKGDSC EYAHGVFESW  300
LHPAQYRTRL CKDETGCNRK VCFFAHKPED LRPVYASTGS GMPSPRSLSS SAADMSTMST  360
LTLGSSSLSL PTTSTPPMSP LASVSSPTNG NLWQNKINLT PPALQLSGSR LKTTLSARDL  420
DFEMELLGLE KNASQLQHQQ QLIDEISRLS TPNYWSGDVS RSAELKPSNH DDMFGSLDSS  480
LLSQLQGGSL KTSQVQSPTG MQMRQNMNQL RASYPANLAS SPVKKPSSFG FDSSSAVAAA  540
VMNSRSAAFA KRSQSFIDRA AVPRLPGFTT AANSAATMSS HLSGWNSPDG KLDWGVHSNN  600
LNKLQKSASF AIRNNGIGGP TTFEPSAGEP DVSWVNSLVK DVPSDSFEQF GPKKRQYNLK  660
REISEMLPSW MEQQLYAEQE QIVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	1e-177	C3H family protein