PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022994734.1
Organism
Cucurbita maxima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 898aa    MW: 99655.1 Da    PI: 6.4106
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022994734.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD v+F   ++++
  XP_022994734.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSMQPPA-QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFI--WNEK 218
                     99*****************************9445444.38************************************************..8899 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_022994734.1 219 NQLLLGIRRA 228
                     999****997 PP
2Auxin_resp1193.9e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F++++nPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  XP_022994734.1 253 AAHAAATNSRFTIFFNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    
MRLSAAGFSP QAPEGERRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVTASTNKE  60
VDTQIPNYPS LPPQLICQLH NLTMHADADT DEVYAQMTLQ PLSAQELKEA YLPAELGTPS  120
RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSM QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDA VLFIWNEKNQ LLLGIRRASR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFFNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRQWPTG LPSFGIKDSD IGMNSPFMWL RGDNSDRGIQ CLNFQGNGVS  420
PWMHPRLDPS MVGMQSDMYQ AMAAAALQEM RAIDYSKLAP ASMLQFQQPQ GFPCQPSTLM  480
QPQMLHQSQS QHAFLQSVQE HQQHSQSQTQ TQSHHLQPQL QPEPSFNNQQ PQHQQQPRQP  540
QPSPQPQPLV GHQPIPCTIP AISQFASCSQ SQSPSLQTVP SLCQQPSFSD SNGNPVTSPT  600
VSPFHSLAGS FVQDESSQLL NIQRANSVIS SAGWPSKRAA IDPLSTGVSQ FFLPQVESGM  660
SQNTVALPPF PGRECAIGDR DEGSDPENHV LFGVNIESSS LLMQNGMSNL RGVGNDNVST  720
TLPFSSNYMS SSGTDFSVNP TTNCVDESGF LQPHENVGQV NQPNGTFVKV HKSGTYSRSL  780
DITKFNNYLE LRSELARMFG LEGELEDPLR SGWQLVFVDR ENDVLLLGDG PWPEFVNSVW  840
CIKILSPDEV QEMGKRGLEL LNSVPIQRLS NNTCDDYGSR QDSRNLISGI TSVGPFDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein