PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022994156.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 429aa MW: 47450.9 Da PI: 5.3074

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022994156.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.6	7.6e-12	122	144	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f++rtGtCk+G+ CkF+H+ XP_022994156.1 122 EDCAFYLRTGTCKFGSLCKFNHP 144 78********************9 PP
2	zf-CCCH	21.3	4.7e-07	150	168	7	25
SGGGGTS--TTTTT-SS-S CS zf-CCCH 7 rffartGtCkyGdrCkFaH 25 ++++rtG Ck+G C+++H XP_022994156.1 150 QYYSRTGGCKFGTACRYNH 168 59***************** PP
3	zf-CCCH	34.2	4.4e-11	193	215	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG CkyG++CkF+H+ XP_022994156.1 193 KECPYYMRTGCCKYGANCKFNHP 215 68********************9 PP
4	zf-CCCH	19.4	1.9e-06	317	343	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ + C ++H++ XP_022994156.1 317 PGQPECSYFLKTGDCKFKSLCIYHHPK 343 5789*********************96 PP
5	zf-CCCH	35.8	1.3e-11	365	388	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++r+G+Ck+G++CkF H+ XP_022994156.1 365 QNVCTYYSRYGICKFGPSCKFDHP 388 568********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MEPSEAVSVP IHCESLPSGS QSLQFHGSVH DPALFDASHV AADDRIHAEL QKLDLKDEKE 60 AAVKDSDGGG EWEVEKNPVE GEGNLEEEEE EVVVDAGDGG EVEKEGEMRG GNNHYPVRSE 120 AEDCAFYLRT GTCKFGSLCK FNHPLRKRHQ YYSRTGGCKF GTACRYNHTR PRALPNPILE 180 LNFLGLPIRL NEKECPYYMR TGCCKYGANC KFNHPDPTTV AVPESLSGYN NGVLLQGGAS 240 QSQITSWTSP RVLNETPTFV PAMISPSQDS KWNAYQAPMY PSEISMLPPL TYAVNNIASE 300 TDLYTSHQQV EEYPERPGQP ECSYFLKTGD CKFKSLCIYH HPKNWNLKLP TCTLNDKGLP 360 LRPDQNVCTY YSRYGICKFG PSCKFDHPIL PASSTSELKQ QPHYSNFNAA EGAEMGGGSG 420 NGVTVEQSA

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MEPSEAVSVP IHCESLPSGS QSLQFHGSVH DPALFDASHV AADDRIHAEL QKLDLKDEKE  60
AAVKDSDGGG EWEVEKNPVE GEGNLEEEEE EVVVDAGDGG EVEKEGEMRG GNNHYPVRSE  120
AEDCAFYLRT GTCKFGSLCK FNHPLRKRHQ YYSRTGGCKF GTACRYNHTR PRALPNPILE  180
LNFLGLPIRL NEKECPYYMR TGCCKYGANC KFNHPDPTTV AVPESLSGYN NGVLLQGGAS  240
QSQITSWTSP RVLNETPTFV PAMISPSQDS KWNAYQAPMY PSEISMLPPL TYAVNNIASE  300
TDLYTSHQQV EEYPERPGQP ECSYFLKTGD CKFKSLCIYH HPKNWNLKLP TCTLNDKGLP  360
LRPDQNVCTY YSRYGICKFG PSCKFDHPIL PASSTSELKQ QPHYSNFNAA EGAEMGGGSG  420
NGVTVEQSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-115	C3H family protein