PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022992025.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 266aa    MW: 30052.1 Da    PI: 9.4359
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022992025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.4e-0894115425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     + Cr f+r   C yGd+C++ H
  XP_022992025.1  94 KACRQFQRRRKCAYGDQCRYLH 115
                     67******************** PP

2zf-CCCH24.83.7e-08175198225
                     -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                     kt+lC   ++tG C+yG+ C+ aH
  XP_022992025.1 175 KTRLCYPLQKTGSCPYGAVCRIAH 198
                     8*******************9777 PP

Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MSATYRFNEI TPPVPEARGD SSALPPPHSD SGLQQRTMPS KSRIPPSNNR NIGYDHELGC  60
MSTPALNDTH RRLPSLRGIE FHEGQLSGRS NEMKACRQFQ RRRKCAYGDQ CRYLHEIPEK  120
TRDFGSTTQN YEVRIVDSGH VMNRRRGLDQ LEEVRSKVQT EIVVRGEIPK PVRCKTRLCY  180
PLQKTGSCPY GAVCRIAHEE AELQKLGPFI AASQRGSVSD ASATTSAATQ VEIGIVCKNE  240
EPRMKQFFKS KKSKRLIAIY ADWLED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-15C3H family protein