PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022991900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 359aa    MW: 40226.5 Da    PI: 7.876
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022991900.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.2e-06326226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k++lC++f+  G C  G+ C F+H+
  XP_022991900.1  3 KRVLCKYFSH-GACLKGEYCEFSHD 26
                    99****9999.*************5 PP

2zf-CCCH25.32.7e-083454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C ++++ G C +G+rC++ H+
  XP_022991900.1 34 VCTYYQK-GRCAFGSRCRYDHV 54
                    6******.*************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MSKRVLCKYF SHGACLKGEY CEFSHDWSAP PSNVCTYYQK GRCAFGSRCR YDHVKVSQAE  60
SSASSNSEQP HVSESVSIAH PLLSRPLSPL AGSTSELAGS KISCPPSHVE IAWSGQSEHS  120
DGLDDWRTGV TRIVGPADIP ICSFAAAGSD CPRGQNCHHI HGDLCPTCGK HCLHPFRTYE  180
REEHIKACEK KQKHLESLKH SQDIECSVCL ERVLSKTEIA ERKFGLLSEC DHPFCISCIR  240
NWRNTSSTSG MNVNSALRAC PICRKLSYFV IPSVIWYSSK EEKQEIVDSY KSRLRSIDCK  300
HFNFGNGNCP FGSSCFYKHA HWDGRLEEIT LRHIGNQDGL TVIAKNIRLS EFLSDLHIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.11e-155C3H family protein