PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022991105.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 293aa MW: 32568.7 Da PI: 7.2264 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.2 | 5.8e-13 | 227 | 251 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + ++G C+yG+ C+FaHg XP_022991105.1 227 KTELCKKWEESGGCPYGEHCRFAHG 251 8***********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence |
MEDDMCPPLP SSLSSTAEAS PNSPEPENLC SLHFVSMYHS IFPPLLSSSS LSFTPSPSSS 60 SSSSADDDFN NPCTATPTST TDDLLFQARL ILEHRELCQR HDLCLRRLRQ VTDDVDCLQR 120 ENAQLRLANA ELIKILSSKT AVDDLQSLIG GGQNGEEVGY EIISPTSVIR KYNSQFDGRN 180 NRRRTSLPKS ISVRSAAASA AAAPLNIQSR RVCGPVELEV YKQGMAKTEL CKKWEESGGC 240 PYGEHCRFAH GVEELRPVIR HPRYKTQICR MVLSGEKCCY GHRCHFRHSL THQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 3e-56 | C3H family protein |