PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022989949.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | ARF | ||||||||
Protein Properties | Length: 885aa MW: 98736.9 Da PI: 5.8568 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.6 | 2.4e-23 | 171 | 272 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_022989949.1 171 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 261 99*****************************8544444..48************************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_022989949.1 262 KNQLLLGIRRA 272 9999****997 PP | |||||||
2 | Auxin_resp | 118 | 7.6e-39 | 297 | 380 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPras+seFv+++ k++ka+ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k XP_022989949.1 297 AAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVK 380 79********************************86599******************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 885 aa Download sequence |
MLSIERYEFP AGFLSCPLGF YYSFLFLIFL CFETFFSDWV KLDMKLSTSG FGQQDHEGGE 60 KKCLNSELWH ACAGPLVSLP TSGTRVVYFP QGHSEQVAAT TNKEVDGHIP NYPNLPPQLI 120 CQLHNVTMHA DVETDEVYAQ MTLQPLTAQE QKDTFLPMEL GIPSRQPTNY FCKTLTASDT 180 STHGGFSVPR RAAEKVFPPL DFSQQPPAQE LIARDLHDVE WKFRHIFRGQ PKRHLLTTGW 240 SVFVSAKRLV AGDSVLFIWN EKNQLLLGIR RATRPQTVMP SSVLSSDSMH IGLLAAAAHA 300 AATNSCFTVF YNPRASPSEF VIPLTKYVKA VFHTRVSVGM RFRMLFETEE SSVRRYMGTI 360 TGISDLDPVR WSNSHWRSVK VGWDESTAGE RQPRVSLWEI EPLTTFPMYP SLFPLRLKRP 420 WHPGVSSVHD NRDDASNGLM WLRGGVGEQA LHLLNLQSAG SLPWLQQRLD SSMFGNDHNQ 480 QYQAMLAAGM PNLGGVDMLR QQIMHLQQPF QYAQQAGLHN SLLQLQQQQL VQQSMPQNIL 540 QAPSQVMSEN LPQHILQQTL QNQPEDLPNQ QQHTYHDTVQ VQSNQFHQGG HSNVPSPTFP 600 RSNLMDSNSN YPESISSRRN IIASSCAEGT GNLSNIYRSG QSILTEQLPQ QSPVSKNAHS 660 PVDAHPNSMS FPFSGRDSIL ELGNCNSDSP SPTLFGVNID SSGLLLPSNV PTYASPSIAP 720 DSTSMPLGDS GFQNSLYNCV QGSSELLHSS GQVDPSNPTQ TFVKVYKTGS VGRSLDISRF 780 SSYQELREEL AQMFGIEGQL EDPCRSGWQL VFVDRENDAL LLGDDPWEAF VNNVWYIKIL 840 SPQDVQELRE QVIESFNPID GQRLTSGGNE AENVSGLPSV GSLEY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | ARF family protein |