PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022988790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 389aa MW: 44381 Da PI: 8.45 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.3 | 9.5e-07 | 8 | 31 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +++ G C++ ++C+FaHg XP_022988790.1 8 FKTKLCVLYQK-GRCSR-PSCSFAHG 31 69*********.*****.*******9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence |
MVVGSKLFKT KLCVLYQKGR CSRPSCSFAH GTAELRRFAG AHDGRREYRG NDLRHKLDSR 60 HSPLQERDSR GRHGPRDYSS SWSLERQSDR KRRKKEYGDS RNDYSGNLRI SDRSEERDRE 120 GKISSASRDT LEGQLNKMQA DIEMAEHHKH QAEVYLDERI QEVDSLTSRI QELESQLYKE 180 REDSRRIKSK IKKFVKAHNR YSRIQDELKR SQARLQQLGD QLGSDVNKIG ANEEDSSINI 240 VSDGEDPGFH AVSPLHDLQK DNSASKKKHV VQDIAENSKR ANESKQKRGR TSTTVSSADK 300 VRGLESGVVV PLTSMAAHAV DEEVDIELEI NNKVNETREN TKEASFGSLP FPPPPPPPIR 360 EINHSRYESE DQNVDVVTLD DERARLDNA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 90 | 96 | RKRRKKE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 9e-53 | C3H family protein |