PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022988586.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

RAV

Protein Properties

Length: 356aa MW: 40327.8 Da PI: 8.2043

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022988586.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	28.4	4e-09	40	87	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 s++kGV +g W +I+ + r++lg+f +++eAa a++ a+ +++ XP_022988586.1 40 SKFKGVVLQQ-NGHWGTQIYA------NhHRIWLGTFKSEDEAAMAYDSAAIRIR 87 79**9877.8**999......44******99********9987 PP
2	B3	89.2	3.3e-28	162	261	1	87
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ltpsdv+k++rlv+pkk+a ++ + ++++l+l d+ r+W+++++y+k+s++yv+t+GW++Fvk+++Lk++D+++F XP_022988586.1 162 FQKELTPSDVGKLNRLVIPKKYAVKYfphipastidnvkRVDDDCDVQLVLFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTITF 256 99***********************9999998866663333499*********************************************** PP EE-SS CS B3 83 kldgr 87 +l + XP_022988586.1 257 YLCEA 261 *8653 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MKQELSSMIS KAKTNAIGED CITCPFPASG CSRQGRSLTS KFKGVVLQQN GHWGTQIYAN 60 HHRIWLGTFK SEDEAAMAYD SAAIRIRSGD CHRNFPWTKF TIEEPNFQNL YTTAALLSML 120 KDSSYRTKFA EYLRDCLESA QTASPSAEKL HDNGRTSIKQ LFQKELTPSD VGKLNRLVIP 180 KKYAVKYFPH IPASTIDNVK RVDDDCDVQL VLFDKMMRQW KFRYCYWKSS QSYVFTRGWN 240 RFVKEKQLKA NDTITFYLCE AAKASDANTT FCVVDVKNRD NHGSLTENEI TSSEMQLDLS 300 HEEVNGSVLP KHADDELNDD LEVSGFKLFG VHIKGKFAGQ CFCLPRSVAA GFPGLI

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MKQELSSMIS KAKTNAIGED CITCPFPASG CSRQGRSLTS KFKGVVLQQN GHWGTQIYAN  60
HHRIWLGTFK SEDEAAMAYD SAAIRIRSGD CHRNFPWTKF TIEEPNFQNL YTTAALLSML  120
KDSSYRTKFA EYLRDCLESA QTASPSAEKL HDNGRTSIKQ LFQKELTPSD VGKLNRLVIP  180
KKYAVKYFPH IPASTIDNVK RVDDDCDVQL VLFDKMMRQW KFRYCYWKSS QSYVFTRGWN  240
RFVKEKQLKA NDTITFYLCE AAKASDANTT FCVVDVKNRD NHGSLTENEI TSSEMQLDLS  300
HEEVNGSVLP KHADDELNDD LEVSGFKLFG VHIKGKFAGQ CFCLPRSVAA GFPGLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	1e-99	RAV family protein