PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022988178.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 302aa MW: 32294.5 Da PI: 9.4702 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25 | 3.2e-08 | 102 | 127 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f C++Gd+C+FaHg+ XP_022988178.1 102 KTRLCNKFNSAEGCRFGDKCHFAHGE 127 8***********************96 PP | |||||||
2 | zf-CCCH | 30.6 | 5.8e-10 | 269 | 294 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +fa+ GtC + +rC+FaHg+ XP_022988178.1 269 FKTKLCANFAK-GTCTFRERCHFAHGE 294 69*********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence |
MDIDAVRKRE RTETALNGNG SFKKFKPEMD SLSTGLGSKS RPCTKFFSTS GCPFGEGCHF 60 AHYVPGGFKA ISQMITPALP PGNRNPVPPQ SFQDGVSPPA VKTRLCNKFN SAEGCRFGDK 120 CHFAHGEWEL GRPNPPQDHG GMGQMQQPRM GGGWNVPPPP PNHGPAASFG ASATAKISVD 180 ASLAGPIIGK NGVNSKNICR MTGARLSIKE HESDPSLKNI ELEGTFDQIN LASSMVRELI 240 ANVGAASANN AMKQHHSATQ QSSGSANNFK TKLCANFAKG TCTFRERCHF AHGESELRKP 300 GM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 3e-77 | C3H family protein |